Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., outer membrane protein assembly factor BamB from Rhodanobacter sp000427505 FW510-R12

 Score =  223 bits (568), Expect = 7e-63
 Identities = 126/387 (32%), Positives = 199/387 (51%), Gaps = 16/387 (4%)

Query: 8   VLVAAGVLALLAGCASEEENVIMAPLPIVKSEFTPKT----LWSASVGDGVGHYFSKLAP 63
           +L+    L  L GC S ++  +  P P+ K +F P      LW +SVGDG G    +L P
Sbjct: 10  LLITLASLVTLTGCHSFKKENVQPPTPLAK-DFKPTVQVTRLWRSSVGDGAGTSGVRLRP 68

Query: 64  DYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEIEG----------SARLSGGITAAFGK 113
                 ++ AS DG + ALD  +GK +W+      G           A  +GG   +   
Sbjct: 69  TVVDGVLYAASTDGKLVALDAASGKSLWSKSSRTHGWFGWGDKKRKDATYAGGPAVSGDL 128

Query: 114 LFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQEDGAQ 173
           L +G+ +G V A++A+ G P W  A+  +VLA+P    ++V+V T  G + AL+     +
Sbjct: 129 LAVGTLDGHVYAVNAKDGSPRWDVAVSSQVLASPVIVGDMVVVRTGDGRIYALDAATSQR 188

Query: 174 KWTIST-EVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATE 232
           +W      VP L+LRG+    A  G +F+G+  G+L A   + G  +W+Q +   +G TE
Sbjct: 189 RWVYDQGTVPLLSLRGNGPLLAANGVLFFGSDDGKLVALRQDNGAKLWEQKLASGEGRTE 248

Query: 233 IDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYLVT 292
           IDRL D D + L+ G TL+   ++G L+A+D  SG+P+W   +SS    A +   +Y V 
Sbjct: 249 IDRLNDADGAILLDGSTLYGTAYHGNLVAVDGPSGRPLWTHPFSSFESPAVNDHAVYGVN 308

Query: 293 DKDHLVAVDTRSGTELWSNTQLEHRLLTAPKMIDDYLVVGDAEGYLHWIDRNSGEFIAQQ 352
           D   + A D   G ++W N  L++R LT P +  +Y+VVGD EGY+HW+    G   A++
Sbjct: 309 DASVVWAFDKNGGADMWKNDALKYRWLTGPAVQGNYVVVGDLEGYVHWLQTGDGALAARE 368

Query: 353 LVNDSGFAVGPLALNDGYVIVTRNGQI 379
            ++       PL + D   +    G+I
Sbjct: 369 RLSKKAIRAQPLVVGDTVYVEDVEGRI 395



 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 60/240 (25%), Positives = 91/240 (37%), Gaps = 37/240 (15%)

Query: 62  APDYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEIEG--SARLSGGITAAFGKLFIGSE 119
           +P    D V V + DG + ALD    +  W  D       S R +G + AA G LF GS+
Sbjct: 161 SPVIVGDMVVVRTGDGRIYALDAATSQRRWVYDQGTVPLLSLRGNGPLLAANGVLFFGSD 220

Query: 120 NGVVNALDAETGEPLWASAI---EG--EVLAAPAADNNIVIVNTS------RGALIALNQ 168
           +G + AL  + G  LW   +   EG  E+     AD  I++  ++       G L+A++ 
Sbjct: 221 DGKLVALRQDNGAKLWEQKLASGEGRTEIDRLNDADGAILLDGSTLYGTAYHGNLVAVDG 280

Query: 169 EDGAQKWTI------STEVPNLTLRGDSRPTAV------AGGVFWGTPS----------- 205
             G   WT       S  V +  + G +  + V       G   W   +           
Sbjct: 281 PSGRPLWTHPFSSFESPAVNDHAVYGVNDASVVWAFDKNGGADMWKNDALKYRWLTGPAV 340

Query: 206 -GRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDL 264
            G         G + W Q       A E      + A PLV+G T++     G++ A  L
Sbjct: 341 QGNYVVVGDLEGYVHWLQTGDGALAARERLSKKAIRAQPLVVGDTVYVEDVEGRIGAYRL 400