Pairwise Alignments
Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056
Subject, 591 a.a., dehydrogenase from Pseudomonas simiae WCS417
Score = 53.1 bits (126), Expect = 2e-11
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 45/210 (21%)
Query: 83 DPQNGKVIWTTDLEIEGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGE 142
DP+N I T L ++G S +N + + P+WA + GE
Sbjct: 37 DPKNPGQIVTNGLGVQGQRY---------------SPLDTLNVDNVKELRPVWAFSFGGE 81
Query: 143 VL----AAPAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVPNLTLRGDSRP------ 192
A P + ++ + S + A++ G + W +P+ D RP
Sbjct: 82 KQRGQQAQPMIKDGVMYLTGSYSRVFAVDARTGKKLWQYDARLPD-----DIRPCCDVIN 136
Query: 193 --TAVAGG-VFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGT 249
A+ G VF+GT +L A + G+++W + V K I A+PLVI G
Sbjct: 137 RGVALYGDLVFFGTLDAKLVALNKDTGKVVWSKKVADHKEGYSIS------AAPLVINGK 190
Query: 250 LFT------VGFNGQLIAIDLRSGQPIWKR 273
L T G G++ A D ++G+ +W R
Sbjct: 191 LITGVAGGEFGVVGKIEAYDPKNGELLWSR 220
Score = 47.0 bits (110), Expect = 1e-09
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 77 GVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKL-FIGSENGVVNALDAETGEPLW 135
GV++A+DP+ GK +W + A L GG+ G L F G+ G + A +A+TGE +W
Sbjct: 470 GVLRAIDPKTGKEVWRH----KNFAPLWGGVLTTKGNLVFTGTPEGFLQAFNAKTGEKVW 525
Query: 136 ASAIEGEVLAAP 147
VL +P
Sbjct: 526 EFQTGSGVLGSP 537
Score = 38.1 bits (87), Expect = 7e-07
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 21/130 (16%)
Query: 112 GKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAAD---------NNIVIVNTSRGA 162
G +++ V A+DA TG+ LW P D ++V T
Sbjct: 95 GVMYLTGSYSRVFAVDARTGKKLWQYDARLPDDIRPCCDVINRGVALYGDLVFFGTLDAK 154
Query: 163 LIALNQEDGAQKWT---------ISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIA 213
L+ALN++ G W+ S L + G T VAGG F G++ A
Sbjct: 155 LVALNKDTGKVVWSKKVADHKEGYSISAAPLVING-KLITGVAGGEFGVV--GKIEAYDP 211
Query: 214 ERGQLIWQQP 223
+ G+L+W +P
Sbjct: 212 KNGELLWSRP 221
Score = 36.2 bits (82), Expect = 3e-06
Identities = 50/191 (26%), Positives = 73/191 (38%), Gaps = 46/191 (24%)
Query: 73 ASRDGVVKALDPQNGKVI----------WTTDLEIEG-----SARLSG-------GITAA 110
A R+G LD NGK I W T L+ +G A G G +
Sbjct: 348 ADRNGFFYVLDRTNGKFIRGFPFVDKITWATGLDKDGRPIYNDASRPGAPGSEAKGTSVF 407
Query: 111 FGKLFIGSENGVVNALDAETG----------EPLWASAIEGEVLAA-PAADNNIVIVNTS 159
F+G++N + A + +TG +W I + AA A I +N
Sbjct: 408 VAPAFLGAKNWMPMAYNRDTGLFYVPSNEWGMDMWNEGIAYKKGAAFLGAGFTIKPLNED 467
Query: 160 R-GALIALNQEDGAQKWTISTEVPN----LTLRGDSRPTAVAGGVFWGTPSGRLAAAIAE 214
G L A++ + G + W P LT +G+ VF GTP G L A A+
Sbjct: 468 YIGVLRAIDPKTGKEVWRHKNFAPLWGGVLTTKGNL--------VFTGTPEGFLQAFNAK 519
Query: 215 RGQLIWQQPVG 225
G+ +W+ G
Sbjct: 520 TGEKVWEFQTG 530
Score = 33.9 bits (76), Expect = 1e-05
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 68 DKVFVASRDGVVKALDPQNGKVIWTTDL-EIEGSARLSGGITAAFGKLF---IGSENGVV 123
D VF + D + AL+ GKV+W+ + + + +S GKL G E GVV
Sbjct: 144 DLVFFGTLDAKLVALNKDTGKVVWSKKVADHKEGYSISAAPLVINGKLITGVAGGEFGVV 203
Query: 124 ---NALDAETGEPLWA-SAIEGEV 143
A D + GE LW+ +EG +
Sbjct: 204 GKIEAYDPKNGELLWSRPTVEGHM 227
Score = 31.2 bits (69), Expect = 8e-05
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 22/104 (21%)
Query: 214 ERGQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTV-----GFNGQLIAIDLRSGQ 268
E G +W + + KGA + G FT+ + G L AID ++G+
Sbjct: 436 EWGMDMWNEGIAYKKGAAFL--------------GAGFTIKPLNEDYIGVLRAIDPKTGK 481
Query: 269 PIWK-RNYSSATD--MATDGSRLYLVTDKDHLVAVDTRSGTELW 309
+W+ +N++ + T G+ ++ T + L A + ++G ++W
Sbjct: 482 EVWRHKNFAPLWGGVLTTKGNLVFTGTPEGFLQAFNAKTGEKVW 525
Score = 30.4 bits (67), Expect = 1e-04
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 268 QPIW-------KRNYSSATDMATDGSRLYLVTDKDHLVAVDTRSGTELWS-NTQLEHRLL 319
+P+W K+ A M DG +YL + AVD R+G +LW + +L +
Sbjct: 71 RPVWAFSFGGEKQRGQQAQPMIKDGV-MYLTGSYSRVFAVDARTGKKLWQYDARLPDDIR 129
Query: 320 TAPKMID-------DYLVVGDAEGYLHWIDRNSGEFIAQQLVND--SGFAV--GPLALND 368
+I+ D + G + L +++++G+ + + V D G+++ PL +N
Sbjct: 130 PCCDVINRGVALYGDLVFFGTLDAKLVALNKDTGKVVWSKKVADHKEGYSISAAPLVING 189
Query: 369 GYVIVTRNGQ 378
+ G+
Sbjct: 190 KLITGVAGGE 199