Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., Outer membrane beta-barrel assembly protein BamB from Sphingobium sp. HT1-2

 Score =  136 bits (342), Expect = 1e-36
 Identities = 93/352 (26%), Positives = 160/352 (45%), Gaps = 12/352 (3%)

Query: 42  PKTLWSASVGDGVGHYFSKLAPDYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEIEGSA 101
           P+  W+AS+           AP  +  K+FV      V A+D   G+ +W T L  EG+ 
Sbjct: 98  PQQAWTASIEGSTPQARLASAPVVSGGKLFVIDAGAHVIAMDANTGQKLWQTSLPAEGNG 157

Query: 102 R--LSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTS 159
           R    GG++    KLF  +  G V +++   G   W     G +  AP  +N  V V   
Sbjct: 158 RALFGGGVSVLGDKLFASTGVGDVVSMNVADGSIGWKVHPGGPLRGAPTLENGHVYVMGQ 217

Query: 160 RGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLI 219
              + ALNQ DGA +WT S  +    + G + P A  G V  G  SG + A   E G+ +
Sbjct: 218 DNQIFALNQSDGATQWTDSGTLQVTGIFGVAAPAAAQGTVIAGYSSGEINAYRYENGRTL 277

Query: 220 WQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSAT 279
           W   + +   +T +  L D+DA P++  G +F +G  G++ + +L SGQ +W+ N +  +
Sbjct: 278 WGDALSRTSISTAVASLTDIDADPVIDRGRVFAIGQGGRMASYELTSGQRLWEINIAGIS 337

Query: 280 DMATDGSRLYLVTDKDHLVAVDTRSG-------TELWSNTQLEHRLL--TAPKMIDDYLV 330
                G  ++ VT    L+ V   +G          W   + + + +  T P +    L+
Sbjct: 338 TPWIAGEWVFAVTSDAKLLCVARATGKIRWISQLRRWQKEKKKDKAIRWTGPVLAGGRLI 397

Query: 331 VGDAEGYLHWIDRNSGEFIAQQLVNDSGFAVGPLALNDGYVIVTRNGQIKKL 382
           +    G L+++D  +G  I Q +  +   ++ P+  N+   I+  +G++  L
Sbjct: 398 LVSTHGDLNYVDPATGT-IQQAVDMNKSMSLSPVVANNMLYILADDGKLTAL 448