Pairwise Alignments
Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056
Subject, 695 a.a., Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.2.8) from Sphingobium sp. HT1-2
Score = 49.3 bits (116), Expect = 3e-10
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Query: 232 EIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWK--------------RNYSS 277
+++ V ++A+PL + G L+ G G + A+D SG+ IWK
Sbjct: 72 DLEGEVSLEATPLAVNGILYFSGSYGAVYAVDGASGRLIWKYDPEIWKVNPTRQAMGMGV 131
Query: 278 ATDMATDGSRLYLVTDKDHLVAVDTRSGTELWSNTQLE----HRLLTAPKMIDDYLVVGD 333
+A D R+++ L+A+D R+G WS L H L AP+ + +++G+
Sbjct: 132 NRGVAYDNGRIFIGVLDGRLIALDARTGAVAWSVNTLPPGTMHSLTGAPRTFNGKVIIGN 191
Query: 334 A------EGYLHWIDRNSG 346
G++ D+ +G
Sbjct: 192 GGADIGQRGFVTAYDQKTG 210
Score = 49.3 bits (116), Expect = 3e-10
Identities = 56/223 (25%), Positives = 84/223 (37%), Gaps = 42/223 (18%)
Query: 77 GVVKALDPQNGKVIWTTDLEI--------EGSARLSGGITAAFGKLFIGSENGVVNALDA 128
G V A+D +G++IW D EI ++ G+ G++FIG +G + ALDA
Sbjct: 97 GAVYAVDGASGRLIWKYDPEIWKVNPTRQAMGMGVNRGVAYDNGRIFIGVLDGRLIALDA 156
Query: 129 ETGEPLWA-----SAIEGEVLAAPAADNNIVIVNT------SRGALIALNQEDGAQKWTI 177
TG W+ + AP N VI+ RG + A +Q+ GAQ W
Sbjct: 157 RTGAVAWSVNTLPPGTMHSLTGAPRTFNGKVIIGNGGADIGQRGFVTAYDQKTGAQAWRF 216
Query: 178 STEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRL- 236
T VP + P W + G +W P E++R+
Sbjct: 217 WT-VPGSPEQNAGDPVMEMAAKSWNGSYWKTGT-----GGTVWNGMTFDP----ELNRIY 266
Query: 237 --------VDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIW 271
D + G LF ++A+D SG+ IW
Sbjct: 267 LGVGNAGPYDPEKRSPGGGDNLFV----ASIVALDADSGKYIW 305
Score = 45.4 bits (106), Expect = 5e-09
Identities = 70/312 (22%), Positives = 112/312 (35%), Gaps = 59/312 (18%)
Query: 95 LEIEGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWA------------SAIEGE 142
L++EG L A G L+ G V A+D +G +W A+
Sbjct: 71 LDLEGEVSLEATPLAVNGILYFSGSYGAVYAVDGASGRLIWKYDPEIWKVNPTRQAMGMG 130
Query: 143 VLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWG 202
V A DN + + G LIAL+ GA W+++T P P G V G
Sbjct: 131 VNRGVAYDNGRIFIGVLDGRLIALDARTGAVAWSVNTLPPGTMHSLTGAPRTFNGKVIIG 190
Query: 203 TPSGRLAAAIAERGQL-------------IWQQPVGQPKGATEIDRLVDVDAS------- 242
A I +RG + W P + A D ++++ A
Sbjct: 191 NG----GADIGQRGFVTAYDQKTGAQAWRFWTVPGSPEQNAG--DPVMEMAAKSWNGSYW 244
Query: 243 PLVIGGTLFT-VGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYLVTDKDHLVAVD 301
GGT++ + F+ +L I L G Y G L++ + +VA+D
Sbjct: 245 KTGTGGTVWNGMTFDPELNRIYLGVGN---AGPYDPEKRSPGGGDNLFVAS----IVALD 297
Query: 302 TRSGTELWSNTQ---------LEHRLLTAPKMIDD----YLVVGDAEGYLHWIDRNSGEF 348
SG +W Q ++ A ID L+ G+ + +DR +G+
Sbjct: 298 ADSGKYIWHYQQNPRESWDYKATANMIAATVTIDGKPRRVLMQQPTNGFFYVLDRETGKL 357
Query: 349 IAQQLVNDSGFA 360
I+ + V +A
Sbjct: 358 ISAEKVGKVNWA 369
Score = 39.3 bits (90), Expect = 3e-07
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 66 AYD--KVFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAF-GKLFIGS---- 118
AYD ++F+ DG + ALD + G V W+ + G+ G F GK+ IG+
Sbjct: 136 AYDNGRIFIGVLDGRLIALDARTGAVAWSVNTLPPGTMHSLTGAPRTFNGKVIIGNGGAD 195
Query: 119 --ENGVVNALDAETGEPLW 135
+ G V A D +TG W
Sbjct: 196 IGQRGFVTAYDQKTGAQAW 214
Score = 28.9 bits (63), Expect = 5e-04
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 105 GGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAP 147
G + A G +F G+ +G V A DA +G+ +W ++ AP
Sbjct: 482 GTLATAGGLVFQGTADGYVRAHDAASGKEMWRFNAGLGIIGAP 524
Score = 24.6 bits (52), Expect = 0.009
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 70 VFVASRDGVVKALDPQNGKVIW 91
VF + DG V+A D +GK +W
Sbjct: 491 VFQGTADGYVRAHDAASGKEMW 512