Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 695 a.a., Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.2.8) from Sphingobium sp. HT1-2

 Score = 47.8 bits (112), Expect = 1e-09
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 25/172 (14%)

Query: 52  DGVGHYFSKLAPDYAYDKV-FVASRDGVVKALDPQNGKVIWT--------TDLEIEGSAR 102
           DG G   S L    A D + + AS   VV A+D   G  +WT         D ++ G A 
Sbjct: 64  DGGG---SSLTAPIAVDGILYYASGYSVVHAVDAATGHELWTYDPQSWKVADQKMRG-AW 119

Query: 103 LSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGE-----VLAAPAADNNIVIVN 157
            S GI    G +++G+ +G + A++A TG  LW++   G+     +  AP   N  V++ 
Sbjct: 120 GSRGIAYDNGAVYVGTIDGRLIAINARTGHRLWSTQTIGKDDERYISGAPWVFNGKVLIG 179

Query: 158 TS-------RGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWG 202
                    RG + A +Q+ G Q W   T   +  L  +++  A+A   + G
Sbjct: 180 HGGADFAPIRGYVTAYDQKTGKQLWRFYTVPGDPKLGFENKAMAMAAKTWTG 231



 Score = 42.4 bits (98), Expect = 4e-08
 Identities = 75/317 (23%), Positives = 120/317 (37%), Gaps = 59/317 (18%)

Query: 91  WTTDLEIEGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAP--- 147
           W  D++  GS+ L+  I A  G L+  S   VV+A+DA TG  LW    +   +A     
Sbjct: 59  WYQDIDGGGSS-LTAPI-AVDGILYYASGYSVVHAVDAATGHELWTYDPQSWKVADQKMR 116

Query: 148 --------AADNNIVIVNTSRGALIALNQEDGAQKWTIST-------EVPNLTLRGDSRP 192
                   A DN  V V T  G LIA+N   G + W+  T        +       + + 
Sbjct: 117 GAWGSRGIAYDNGAVYVGTIDGRLIAINARTGHRLWSTQTIGKDDERYISGAPWVFNGKV 176

Query: 193 TAVAGGVFWGTPSGRLAAAIAERGQLIWQ--QPVGQPKGATEIDRLVDVDASPLVIGGTL 250
               GG  +    G + A   + G+ +W+     G PK   E ++ + + A      G  
Sbjct: 177 LIGHGGADFAPIRGYVTAYDQKTGKQLWRFYTVPGDPKLGFE-NKAMAMAAKTWT--GEW 233

Query: 251 FTVGFNG------------QLIAIDLRSGQPIWKRNYSSATDMATDGSRLYLVTDKDHLV 298
           +  G  G              I I + +G P W +   S       G  L+L +    +V
Sbjct: 234 WKYGGGGTAWNAMAYDPKYNRIYIGVGNGSP-WNQKIRS----PGGGDNLFLCS----IV 284

Query: 299 AVDTRSGTELW-------------SNTQLEHRLLTAPKMIDDYLVVGDAEGYLHWIDRNS 345
           A+D  +G  +W             S   +E   L       D L+     G+ + IDR +
Sbjct: 285 ALDADTGEYVWHYQTNPGETWDFNSAMDMELARLKIDGRERDVLMHAPKNGFFYVIDRAT 344

Query: 346 GEFIAQQLVNDSGFAVG 362
           G+ I+ + +    +A G
Sbjct: 345 GKLISARNIVPVNWASG 361



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 105 GGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAP 147
           G  T A   LF G+  G   A  A +G+PLW+   +  V+A P
Sbjct: 481 GTATTAGNLLFQGNAGGKFVAYAATSGKPLWSFDAQTAVMAQP 523