Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., quinoprotein ethanol dehydrogenase from Pseudomonas putida KT2440

 Score = 43.5 bits (101), Expect = 2e-08
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 77  GVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKL-FIGSENGVVNALDAETGEPLW 135
           G ++A+DP  GK++W    E +    L  G+ A  G L F G+ +G   A DA+TG+ LW
Sbjct: 508 GTLRAMDPTTGKLVW----EHKEHLPLWAGVLATKGNLVFTGTGDGFFKAFDAKTGKELW 563

Query: 136 ASAIEGEVLAAP 147
                  +++ P
Sbjct: 564 KFQTGSGIVSPP 575



 Score = 40.0 bits (92), Expect = 2e-07
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 151 NNIVIVNTSRGALIALNQEDGAQKWTISTEVP-NLTLRGD--SRPTAVAGG-VFWGTPSG 206
           + +V V  S   + AL+ + G + WT +  +P N+    D  +R  A+ G  +++GT   
Sbjct: 110 DGVVYVTGSYSRVFALDAKTGKRLWTYNHRLPDNIRPCCDVVNRGAAIYGDKIYFGTLDA 169

Query: 207 RLAAAIAERGQLIWQQPVGQPK------GATEIDRLVDVDASPLVIGGTLFTVGFNGQLI 260
           R+ A     G+++W +  G         GA  + +        L+ G +    G  GQL 
Sbjct: 170 RVIALDKRTGKVVWNKKFGDHSAGYTMTGAPVLIKDKTSGKVLLIHGSSGDEFGVVGQLF 229

Query: 261 AIDLRSGQPIWKRNY 275
           A D  +G+ +W R +
Sbjct: 230 ARDPDTGEEVWMRPF 244



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 15/103 (14%)

Query: 240 DASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDM-----------ATDGSRL 288
           ++  +V  G ++  G   ++ A+D ++G+ +W  N+    ++           A  G ++
Sbjct: 103 ESQAIVSDGVVYVTGSYSRVFALDAKTGKRLWTYNHRLPDNIRPCCDVVNRGAAIYGDKI 162

Query: 289 YLVTDKDHLVAVDTRSGTELWSNTQLEH----RLLTAPKMIDD 327
           Y  T    ++A+D R+G  +W+    +H     +  AP +I D
Sbjct: 163 YFGTLDARVIALDKRTGKVVWNKKFGDHSAGYTMTGAPVLIKD 205



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 10/142 (7%)

Query: 37  KSEFTPKTLWSASVGDGV--GHYFSKLAPDYAYDKVFVASRDGVVKALDPQNGKVIWTTD 94
           K+ F     WS S GD    G     +  D     V+V      V ALD + GK +WT +
Sbjct: 81  KNVFKLTPAWSYSFGDEKQRGQESQAIVSDGV---VYVTGSYSRVFALDAKTGKRLWTYN 137

Query: 95  LEIEGSAR-----LSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAA 149
             +  + R     ++ G      K++ G+ +  V ALD  TG+ +W              
Sbjct: 138 HRLPDNIRPCCDVVNRGAAIYGDKIYFGTLDARVIALDKRTGKVVWNKKFGDHSAGYTMT 197

Query: 150 DNNIVIVNTSRGALIALNQEDG 171
              ++I + + G ++ ++   G
Sbjct: 198 GAPVLIKDKTSGKVLLIHGSSG 219



 Score = 35.4 bits (80), Expect = 5e-06
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)

Query: 68  DKVFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAF-----GKLFI-----G 117
           DK++  + D  V ALD + GKV+W        +     G          GK+ +     G
Sbjct: 160 DKIYFGTLDARVIALDKRTGKVVWNKKFGDHSAGYTMTGAPVLIKDKTSGKVLLIHGSSG 219

Query: 118 SENGVVNAL---DAETGEPLW 135
            E GVV  L   D +TGE +W
Sbjct: 220 DEFGVVGQLFARDPDTGEEVW 240



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 187 RGDSRPTAVAGGVFWGTPS-GRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASPLV 245
           RG      V+ GV + T S  R+ A  A+ G+ +W      P        +V+  A+  +
Sbjct: 100 RGQESQAIVSDGVVYVTGSYSRVFALDAKTGKRLWTYNHRLPDNIRPCCDVVNRGAA--I 157

Query: 246 IGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYLVTDK 294
            G  ++    + ++IA+D R+G+ +W + +   +   T      L+ DK
Sbjct: 158 YGDKIYFGTLDARVIALDKRTGKVVWNKKFGDHSAGYTMTGAPVLIKDK 206



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 37/146 (25%), Positives = 51/146 (34%), Gaps = 31/146 (21%)

Query: 91  WTTDLEIE-GSARLSGGITAAFGKLFIGSENGVVNALDAETGE---------PLWASAIE 140
           WT ++  + GSA L  G      K       G + A+D  TG+         PLWA  + 
Sbjct: 480 WTEEVNYKKGSAYLGMGFRI---KRMYDDHVGTLRAMDPTTGKLVWEHKEHLPLWAGVL- 535

Query: 141 GEVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTIST----EVPNLTLRGDSRP---- 192
                  A   N+V   T  G   A + + G + W   T      P +T   D       
Sbjct: 536 -------ATKGNLVFTGTGDGFFKAFDAKTGKELWKFQTGSGIVSPPITWEQDGEQYIGV 588

Query: 193 TAVAGGV--FWGTPSGRLAAAIAERG 216
           T   GG    WG     L   +A+ G
Sbjct: 589 TVGYGGAVPLWGGDMAELTKPVAQGG 614



 Score = 29.3 bits (64), Expect = 3e-04
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 257 GQLIAIDLRSGQPIWKRNYSS---ATDMATDGSRLYLVTDKDHLVAVDTRSGTELW 309
           G L A+D  +G+ +W+        A  +AT G+ ++  T      A D ++G ELW
Sbjct: 508 GTLRAMDPTTGKLVWEHKEHLPLWAGVLATKGNLVFTGTGDGFFKAFDAKTGKELW 563



 Score = 28.5 bits (62), Expect = 6e-04
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 70  VFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSGGIT-AAFGKLFIGSENGVVNALDA 128
           VF  + DG  KA D + GK +W       GS  +S  IT    G+ +IG   G   A+  
Sbjct: 542 VFTGTGDGFFKAFDAKTGKELWKFQ---TGSGIVSPPITWEQDGEQYIGVTVGYGGAV-- 596

Query: 129 ETGEPLW 135
               PLW
Sbjct: 597 ----PLW 599