Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 54.7 bits (130), Expect = 8e-12
 Identities = 76/328 (23%), Positives = 127/328 (38%), Gaps = 79/328 (24%)

Query: 70  VFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSG-------GITAAFGKLFIGSENGV 122
           ++V +   VV A+D + GK +WT D ++   A   G       G+    GK+F+ + +G 
Sbjct: 115 MYVTASWSVVHAVDVRTGKRLWTFDPKVSREAGYKGCCDVVNRGVALHEGKVFVAAYDGR 174

Query: 123 VNALDAETGEPLWAS------AIEGEVLAAPAADNNIVIVNTS------RGALIALNQED 170
           + A+DA TGE +W+            +  AP      VI+         RG + A + + 
Sbjct: 175 LIAIDAATGEQVWSKDTIIDRKFSYTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAKT 234

Query: 171 GAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGA 230
           G QKW   T VP    +     +       W  P+G+            W +  G     
Sbjct: 235 GDQKWRWFT-VPGDPSKPFEDESMAKAAKTW-DPAGK------------WWEAGG----- 275

Query: 231 TEIDRLVDVDASPLVIGGTLF-TVGFNGQ--LIAIDLRSGQPIWKRNYSSATDMATDGSR 287
                           GGT + T+ F+ +  L+ I   +G P W R+  S       G  
Sbjct: 276 ----------------GGTAWDTMTFDPELNLMYIGTGNGSP-WARSKRS----PAGGDN 314

Query: 288 LYLVTDKDHLVAVDTRSGTELWSNTQLE----HRLLTAPKMIDD---------YLVVGDA 334
           LYL +    +VA++  +G  +W   +          T P ++ D          ++    
Sbjct: 315 LYLAS----IVALNPDTGKYVWHYQETPGDNWDFTSTQPMILADIKLDNKPRKVILHAPK 370

Query: 335 EGYLHWIDRNSGEFIAQQLVNDSGFAVG 362
            G+   IDR +G+FI+ +   D  +A G
Sbjct: 371 NGFFFVIDRTNGKFISAKNFVDVNWATG 398



 Score = 42.7 bits (99), Expect = 3e-08
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 69  KVFVASRDGVVKALDPQNGKVIWTTDLEIEG--SARLSGGITAAFGKLFIGS------EN 120
           KVFVA+ DG + A+D   G+ +W+ D  I+   S  ++G      GK+ IG+        
Sbjct: 165 KVFVAAYDGRLIAIDAATGEQVWSKDTIIDRKFSYTITGAPRVFKGKVIIGNGGAEYGVR 224

Query: 121 GVVNALDAETGEPLW 135
           G + A DA+TG+  W
Sbjct: 225 GYITAYDAKTGDQKW 239



 Score = 35.4 bits (80), Expect = 5e-06
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 77  GVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWA 136
           G + A DP   K  WT +   + S    G +T A   +F G+ +G   A +A +GE LW 
Sbjct: 492 GRLVAWDPVQQKARWTQE---QISPWNGGTLTTAGNLVFQGTADGRFIAYNATSGEKLWE 548

Query: 137 SAIEGEVLAAPA 148
           +     V+AAP+
Sbjct: 549 TPTGTGVIAAPS 560



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 17/115 (14%)

Query: 167 NQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAER-GQLIW----- 220
           N +D    W+ + E    + RG      V  G+ + T S  +  A+  R G+ +W     
Sbjct: 86  NVKDLGLVWSYNLE----SSRGVESTPLVVDGIMYVTASWSVVHAVDVRTGKRLWTFDPK 141

Query: 221 -QQPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRN 274
             +  G  KG  ++     V+    +  G +F   ++G+LIAID  +G+ +W ++
Sbjct: 142 VSREAGY-KGCCDV-----VNRGVALHEGKVFVAAYDGRLIAIDAATGEQVWSKD 190



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 161 GALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIW 220
           G L+A +      +WT     P     G +  TA    VF GT  GR  A  A  G+ +W
Sbjct: 492 GRLVAWDPVQQKARWTQEQISP---WNGGTLTTA-GNLVFQGTADGRFIAYNATSGEKLW 547

Query: 221 QQPVGQPKGATEIDRLVD 238
           + P G    A     +VD
Sbjct: 548 ETPTGTGVIAAPSTYMVD 565