Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 1044 a.a., ankyrin repeat-containing protein from Magnetospirillum magneticum AMB-1

 Score = 53.5 bits (127), Expect = 3e-11
 Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 31/214 (14%)

Query: 69  KVFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSGGI----TAAFGKLFIGSENGVVN 124
           +VF  SR+G   ALD  +G V W           L+GG+     A    ++  ++N  + 
Sbjct: 730 RVFTGSRNGYFYALDAGSGAVSW--------KKWLAGGVERAPAADGAAVYAVTQNNTLF 781

Query: 125 ALDAETGEPLWASAIE--GEVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVP 182
            LDA  G  LW    +  G    AP   +  ++   S   L  + + DG + W  S E+P
Sbjct: 782 KLDAANGSVLWRFQYDHGGSPHTAPHLIDGGLVAFASSQRLYVIRRNDGTEAW--SVEIP 839

Query: 183 NLTLRGDSRPTAVAGGVFWGTPS--GRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVD 240
              L G +    VA G  + + S  G +A  +A R   +++ P      A EI       
Sbjct: 840 GAGL-GPADSMTVANGKAYISLSAGGIIAVDLARRTTALYRPPAETSFSAPEIG------ 892

Query: 241 ASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRN 274
                  GT++    +G L AID  + +  W+++
Sbjct: 893 ------DGTVYATARDGFLYAIDATTLRLKWRQS 920



 Score = 52.0 bits (123), Expect = 8e-11
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 245 VIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMA--TDGSRLYLVTDKDHLVAVDT 302
           +  G +FT   NG   A+D  SG   WK+  +   + A   DG+ +Y VT  + L  +D 
Sbjct: 726 IADGRVFTGSRNGYFYALDAGSGAVSWKKWLAGGVERAPAADGAAVYAVTQNNTLFKLDA 785

Query: 303 RSGTELWSNTQLEH--RLLTAPKMIDDYLVVGDAEGYLHWIDRNSG 346
            +G+ LW   Q +H     TAP +ID  LV   +   L+ I RN G
Sbjct: 786 ANGSVLW-RFQYDHGGSPHTAPHLIDGGLVAFASSQRLYVIRRNDG 830



 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 60/235 (25%), Positives = 88/235 (37%), Gaps = 22/235 (9%)

Query: 103 LSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGA 162
           +   +  A G++F GS NG   ALDA +G   W   + G V  APAAD   V   T    
Sbjct: 720 IKDAVAIADGRVFTGSRNGYFYALDAGSGAVSWKKWLAGGVERAPAADGAAVYAVTQNNT 779

Query: 163 LIALNQEDGAQKWTISTEVPNLTLRGDSRPTA---VAGGVFWGTPSGRLAAAIAERGQLI 219
           L  L+  +G+  W    +       G S  TA   + GG+     S RL       G   
Sbjct: 780 LFKLDAANGSVLWRFQYD------HGGSPHTAPHLIDGGLVAFASSQRLYVIRRNDGTEA 833

Query: 220 WQQPV-GQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDL-RSGQPIWKRNYSS 277
           W   + G   G  +         S  V  G  +     G +IA+DL R    +++    +
Sbjct: 834 WSVEIPGAGLGPAD---------SMTVANGKAYISLSAGGIIAVDLARRTTALYRPPAET 884

Query: 278 ATDMATDGSRLYLVTDKD-HLVAVDTRSGTELWSNTQLEHRLLTAPKMIDDYLVV 331
           +      G      T +D  L A+D  +    W  + L  + L  P   D  L +
Sbjct: 885 SFSAPEIGDGTVYATARDGFLYAIDATTLRLKWRQS-LGEQALVRPLFHDGILYI 938