Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., pyrrolo-quinoline quinone from Magnetospirillum magneticum AMB-1

 Score =  120 bits (300), Expect = 1e-31
 Identities = 85/347 (24%), Positives = 153/347 (44%), Gaps = 13/347 (3%)

Query: 45  LWSASVGDGVGHYFSKLA-PDYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEIEGSARL 103
           +W +  G G G     L  P  A  K+F      +V A D   GK +W T+L  + ++ +
Sbjct: 94  VWKSDAGTGAGKRRRLLGQPIIAEGKIFTVDASSMVTAFDANTGKRLWRTELTPDDTSEV 153

Query: 104 --SGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRG 161
             SGG+    G++F  +    V ALDA TG+  W   + G +  +P      V   T   
Sbjct: 154 YTSGGLGYEDGQVFAATGFAQVVALDARTGKIDWRQTVSGPLRGSPTVRGGRVFAVTVDN 213

Query: 162 ALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQ 221
              AL  EDG+  WT +    +  L   + P      V     SG L A   E G +IWQ
Sbjct: 214 QTHALAAEDGSVLWTHAGIAESAGLLAGNSPAVDGNMVVVPYSSGELFALRVENGSMIWQ 273

Query: 222 QPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDM 281
             +   +    +  L+D+   P +  G ++ +     L+ ++ RSG+ IW++        
Sbjct: 274 DSLSTVRRTENVGALMDIRGRPAIDRGRVYAISNADMLVCLEERSGRRIWEKEIGGVQSP 333

Query: 282 ATDGSRLYLVTDKDHLVAVDTRSG-----TEL--WSNTQ-LEHRLL-TAPKMIDDYLVVG 332
              G  LY++T+ + ++A++ ++G     TE+  W N +  E R++   P +  D L+V 
Sbjct: 334 WIAGDYLYVLTNSNEVLALEAKTGRIVWVTEMQNWENPKDREGRIVWVGPVLASDRLIVA 393

Query: 333 DAEGYLHWIDRNSGEFIAQQLVNDSGFAVGPLALNDGYVIVTRNGQI 379
            ++G L  +   +G+ +  +    +  ++ P+  N     +T +  +
Sbjct: 394 SSDGKLVSLSPYTGDMLGWEEA-PAAISIAPIIANGTMYFLTDDADL 439



 Score = 38.9 bits (89), Expect = 3e-07
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 15/142 (10%)

Query: 31  APLPIVKSEFTPKTLWSASVGDGVGHYFSKLAPDYAYDKVFVASRDGVVKALDPQNGKVI 90
           A + +   E + + +W   +G GV       +P  A D ++V +    V AL+ + G+++
Sbjct: 308 ADMLVCLEERSGRRIWEKEIG-GVQ------SPWIAGDYLYVLTNSNEVLALEAKTGRIV 360

Query: 91  WTTDLEI-------EGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEV 143
           W T+++        EG     G + A+  +L + S +G + +L   TG+ L        +
Sbjct: 361 WVTEMQNWENPKDREGRIVWVGPVLAS-DRLIVASSDGKLVSLSPYTGDMLGWEEAPAAI 419

Query: 144 LAAPAADNNIVIVNTSRGALIA 165
             AP   N  +   T    L+A
Sbjct: 420 SIAPIIANGTMYFLTDDADLVA 441