Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., outer membrane protein assembly factor BamB from Escherichia coli ECRC62

 Score =  343 bits (881), Expect = 4e-99
 Identities = 173/386 (44%), Positives = 252/386 (65%), Gaps = 11/386 (2%)

Query: 9   LVAAGVLA--LLAGCA---SEEENVIMAPLPIVKSEFTPKTLWSASVGDGVGHYFSKLAP 63
           L+  G+L+  LL+GC+   SEE+ V M+PLP V+++FTP T WS SVG G+G+++S L P
Sbjct: 6   LLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFYSNLHP 65

Query: 64  DYAYDKVFVASRDGVVKALDPQNGKVIWTTDL-EIEG-----SARLSGGITAAFGKLFIG 117
             A + V+ A R G+VKAL+  +GK IW+  L E +G      A LSGG+T + G ++IG
Sbjct: 66  ALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIG 125

Query: 118 SENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTI 177
           SE   V AL+   G   W + + GE L+ P   + +V+++TS G L ALN+ DGA KWT+
Sbjct: 126 SEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTV 185

Query: 178 STEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLV 237
           + ++P+L+LRG+S P    G    G  +GR++A + E+GQ+IWQQ + Q  G+TEIDRL 
Sbjct: 186 NLDMPSLSLRGESAPATAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS 245

Query: 238 DVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYLVTDKDHL 297
           DVD +P+V+ G +F + +NG L A+DLRSGQ +WKR   S  D   DG+R+YLV   D +
Sbjct: 246 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRV 305

Query: 298 VAVDTRSGTELWSNTQLEHRLLTAPKMIDDYLVVGDAEGYLHWIDRNSGEFIAQQLVNDS 357
           +A+    G  LW+ + L HRLLT+P + +  LVVGD+EGYLHWI+   G F+AQQ V+ S
Sbjct: 306 MALTIDGGVTLWAQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS 365

Query: 358 GFAVGPLALNDGYVIVTRNGQIKKLT 383
           GF   P+A +   +I  ++G +  +T
Sbjct: 366 GFQTEPVAADGKLLIQAKDGTVYSIT 391