Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., PQQ-binding-like beta-propeller repeat protein from Bacteroides stercoris CC31F

 Score = 73.2 bits (178), Expect = 2e-17
 Identities = 76/319 (23%), Positives = 130/319 (40%), Gaps = 31/319 (9%)

Query: 50  VGDGVGHYFSKLAPDYAYDKVFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSGGITA 109
           V  G G Y S   P    DKVFV    G + A   +NGK +W+     +   R+ G    
Sbjct: 297 VQTGAGIYCS---PAVEKDKVFVGDDLGRLTAYALKNGKKLWS----FQSGKRIVGTPAV 349

Query: 110 AFGKLFIGSENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQE 169
           + G +  GS +  +  LDA+ G  LW       VL A   +N I  +  S     A+N  
Sbjct: 350 SEGIVVFGSADCKIYGLDAQNGNLLWTVEAAEPVLGAVTIENGIAYIGASDHTFRAVNIR 409

Query: 170 DGAQKWTISTEVPNLTLRG--DSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQP 227
            G  KW  +       +RG  +++P      V +G     L       G+ +W+   G  
Sbjct: 410 TGEVKWAFA------GVRGYIETKPLVTDNKVIFGAWDNTLYTLNKADGKELWKWTGG-- 461

Query: 228 KGATEIDRLVDVDAS--PLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATD---MA 282
                + R+    A+  P+   G +F       + AID+ +G  +W+   S   +   ++
Sbjct: 462 -----LTRMHFSPAAVWPVAADGKVFITDPQRAMTAIDIETGNTVWRTFQSMVRETIGLS 516

Query: 283 TDGSRLYLVTDKDHLVAVDTRSGT--ELW-SNTQLEHRLLTAPKMIDDYLVVGDA-EGYL 338
            D  R+Y  T  D +V   T+     +LW SN    +    + ++  + +V G   EG +
Sbjct: 517 EDKERIYSKTMNDSIVCYSTKGDQPHKLWASNVGFGYEHAPSMQVEKNGVVFGSTKEGLI 576

Query: 339 HWIDRNSGEFIAQQLVNDS 357
             ++  +G+ + +    +S
Sbjct: 577 FALEAATGKVLWKHKTGNS 595



 Score = 42.7 bits (99), Expect = 3e-08
 Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 28/225 (12%)

Query: 135 WASAIEGEVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTA 194
           W       +  +PA + + V V    G L A   ++G + W+  +       R    P  
Sbjct: 295 WIVQTGAGIYCSPAVEKDKVFVGDDLGRLTAYALKNGKKLWSFQS-----GKRIVGTPAV 349

Query: 195 VAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQP-KGATEIDRLVDVDASPLVIGGTLFTV 253
             G V +G+   ++    A+ G L+W     +P  GA  I+             G  +  
Sbjct: 350 SEGIVVFGSADCKIYGLDAQNGNLLWTVEAAEPVLGAVTIE------------NGIAYIG 397

Query: 254 GFNGQLIAIDLRSGQPIWK----RNYSSATDMATDGSRLYLVTDKDHLVAVDTRSGTELW 309
             +    A+++R+G+  W     R Y     + TD   ++   D + L  ++   G ELW
Sbjct: 398 ASDHTFRAVNIRTGEVKWAFAGVRGYIETKPLVTDNKVIFGAWD-NTLYTLNKADGKELW 456

Query: 310 SNTQLEHRLLTAPKMI-----DDYLVVGDAEGYLHWIDRNSGEFI 349
             T    R+  +P  +     D  + + D +  +  ID  +G  +
Sbjct: 457 KWTGGLTRMHFSPAAVWPVAADGKVFITDPQRAMTAIDIETGNTV 501



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 8/53 (15%)

Query: 42  PKTLWSASVGDGVGHYFSKLAPDYAYDK---VFVASRDGVVKALDPQNGKVIW 91
           P  LW+++VG G  H     AP    +K   VF ++++G++ AL+   GKV+W
Sbjct: 541 PHKLWASNVGFGYEH-----APSMQVEKNGVVFGSTKEGLIFALEAATGKVLW 588