Pairwise Alignments

Query, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., BamABCDE complex OM biogenesis lipoprotein from Escherichia coli BL21

 Score =  343 bits (881), Expect = 4e-99
 Identities = 173/386 (44%), Positives = 252/386 (65%), Gaps = 11/386 (2%)

Query: 9   LVAAGVLA--LLAGCA---SEEENVIMAPLPIVKSEFTPKTLWSASVGDGVGHYFSKLAP 63
           L+  G+L+  LL+GC+   SEE+ V M+PLP V+++FTP T WS SVG G+G+++S L P
Sbjct: 6   LLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFYSNLHP 65

Query: 64  DYAYDKVFVASRDGVVKALDPQNGKVIWTTDL-EIEG-----SARLSGGITAAFGKLFIG 117
             A + V+ A R G+VKAL+  +GK IW+  L E +G      A LSGG+T + G ++IG
Sbjct: 66  ALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIG 125

Query: 118 SENGVVNALDAETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTI 177
           SE   V AL+   G   W + + GE L+ P   + +V+++TS G L ALN+ DGA KWT+
Sbjct: 126 SEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTV 185

Query: 178 STEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLV 237
           + ++P+L+LRG+S P    G    G  +GR++A + E+GQ+IWQQ + Q  G+TEIDRL 
Sbjct: 186 NLDMPSLSLRGESAPATAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS 245

Query: 238 DVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYLVTDKDHL 297
           DVD +P+V+ G +F + +NG L A+DLRSGQ +WKR   S  D   DG+R+YLV   D +
Sbjct: 246 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRV 305

Query: 298 VAVDTRSGTELWSNTQLEHRLLTAPKMIDDYLVVGDAEGYLHWIDRNSGEFIAQQLVNDS 357
           +A+    G  LW+ + L HRLLT+P + +  LVVGD+EGYLHWI+   G F+AQQ V+ S
Sbjct: 306 MALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS 365

Query: 358 GFAVGPLALNDGYVIVTRNGQIKKLT 383
           GF   P+A +   +I  ++G +  +T
Sbjct: 366 GFQTEPVAADGKLLIQAKDGTVYSIT 391