Pairwise Alignments

Query, 376 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  175 bits (443), Expect = 2e-48
 Identities = 119/347 (34%), Positives = 183/347 (52%), Gaps = 48/347 (13%)

Query: 22  VPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVRVSVPTMEAAEAFKLIKQQ- 80
           V +G  AP+ VQSMTNT T D   T  Q+K L   G+++VR++V   EAA+A   I++Q 
Sbjct: 38  VTVGGDAPVRVQSMTNTDTADAVGTAIQVKELALAGSELVRITVNNDEAAKAVPYIREQL 97

Query: 81  ----VSVPLVADIHFDYRIALKVAEYGVDCL---RINPGNIGN----EARIRSVVDCARD 129
               ++VPL+ D H++    L       + L   RINPGN+G     + +   +V+ A  
Sbjct: 98  DRMGINVPLIGDFHYNGHRLLTDHPACAEALSKYRINPGNVGRGDKGDRQFAQMVEIAAR 157

Query: 130 KGIPIRIGVNGGSLEKDLQLKY-----GEPTP--------EALVESAMRHVDILDR--LN 174
               IRIGVN GSL++DL  +         TP        EAL+ SA+      +   LN
Sbjct: 158 YDKAIRIGVNWGSLDQDLLARLMDENANRSTPWEARQVMYEALITSALESARKAEEIGLN 217

Query: 175 FDQFKVSVKASDVFLAVDSYRLLAKKIDQPLHLGITEAGGARAGSVKSAVGLGMLLAEGI 234
            +   +S K S V   +  Y+ LA++ D  LHLG+TEAG    G+V SA  L +LL +GI
Sbjct: 218 GNNIVLSCKVSGVQDLIAVYQALAQRCDYALHLGLTEAGMGTKGAVASAAALSVLLQQGI 277

Query: 235 GDTLRISLAADP----VEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVIGTVNALE 290
           GDT+R+SL   P     +E+ +  +IL++L +R+   +  ACP C R       T   L 
Sbjct: 278 GDTIRVSLTPQPGEARTQEVVIALEILQALGMRAFVPSVTACPGCGR---TTSTTFQELA 334

Query: 291 QRLEDVL--------------TPMDVSIIGCVVNGPGEAEVSHLGLA 323
           ++++D L                + V+++GC+VNGPGE++ + +G++
Sbjct: 335 KQIDDYLRGSMPVWRARYPGVENLKVAVMGCIVNGPGESKHADIGIS 381