Pairwise Alignments

Query, 376 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Agrobacterium fabrum C58

 Score =  174 bits (442), Expect = 3e-48
 Identities = 119/377 (31%), Positives = 197/377 (52%), Gaps = 52/377 (13%)

Query: 8   PIKRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVRVSVPT 67
           P  RR S  + VG V +G GAP+ VQSMTNT T D+ ATV Q+ +L + G+++VR++V  
Sbjct: 9   PKPRRASVAVDVGGVIVGGGAPVVVQSMTNTDTADIDATVRQVAALFQAGSEMVRITVDR 68

Query: 68  MEAAEAF-----KLIKQQVSVPLVADIHFDYRIALKVAEYGVDCL---RINPGNIG---- 115
            E+A A      +L++  + VPL+ D H+     L       + L   RINPGN+G    
Sbjct: 69  DESAAAVPKIRERLLRLGMDVPLIGDFHYIGHKLLADHPACAEALAKYRINPGNVGFKDK 128

Query: 116 NEARIRSVVDCARDKGIPIRIGVNGGSLEKDL-------------QLKYGEPTPEALVES 162
            + +   +V+ A     P+RIGVN GSL+++L              L   + T EA+V+S
Sbjct: 129 KDKQFGEIVEMAIRYDKPVRIGVNWGSLDQELLTTLMDRNKEQGFPLSARQVTREAIVQS 188

Query: 163 AMRHVDILDRLNFDQFKV--SVKASDVFLAVDSYRLLAKKIDQPLHLGITEAGGARAGSV 220
           A+   ++ + +   + ++  S K S V   +  Y +L+++ +  LHLG+TEAG    G V
Sbjct: 189 ALISAELAEEIGLPRNRIILSAKVSQVQDLIAVYSMLSERSNHALHLGLTEAGMGSKGIV 248

Query: 221 KSAVGLGMLLAEGIGDTLRISLAADP----VEEIKVGFDILKSLRIRSRGINFIACPSCS 276
            S+  +G +L  GIGDT+R+SL  +P      E++V  ++L+ +  R       ACP C 
Sbjct: 249 ASSAAMGYVLQHGIGDTIRVSLTPEPNGDRTREVQVAQELLQVMGFRQFIPVVAACPGCG 308

Query: 277 RQEFDVIGTVNALEQRLEDVL--------------TPMDVSIIGCVVNGPGEAEVSHLGL 322
           R    V      L Q +++ +                ++V+++GC+VNGPGE++ + +G+
Sbjct: 309 RTTSTVF---QELAQNIQNDIRKNMPIWREKYPGVEALNVAVMGCIVNGPGESKHADIGI 365

Query: 323 A----GSNKKSAFYEDG 335
           +    G +  +  + DG
Sbjct: 366 SLPGTGESPAAPVFIDG 382