Pairwise Alignments

Query, 616 a.a., chaperone protein HscA from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription (NCBI) from Escherichia coli BW25113

 Score =  267 bits (683), Expect = 8e-76
 Identities = 190/571 (33%), Positives = 298/571 (52%), Gaps = 58/571 (10%)

Query: 19  KLAAGIDLGTTNSLVASVRSGTASTLVDSQGRSILPSVVNYGA-DATRVGYPAREQAETD 77
           +LA GIDLGTTNSL+A  + G A  + +  G  + PS+++    +   VG PA  +  + 
Sbjct: 5   ELAIGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIISMDENNHILVGKPAVSRRTSH 64

Query: 78  PHNTVISVKRLLGRSLQDINQRYPHLPYRFKASEKGLPIVQTAQGDKNPIQISADILKAL 137
           P  T    KR +G +            +R  +     P            ++S+ +L++L
Sbjct: 65  PDKTAALFKRAMGSNTN----------WRLGSDTFNAP------------ELSSLVLRSL 102

Query: 138 AERATATLGGELAGVVITVPAYFDDAQRVATKDAAALAGLHVLRLLNEPTAAAIAYGLDS 197
            E A   L   +  VVI+VPAYF D QR  T+ AA LAGL+ +RL+NEPTAAA+AYGL +
Sbjct: 103 KEDAEEFLQRPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGLHT 162

Query: 198 GQEGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDDFDHLIADHL--QAQIGL 255
            Q     V+DLGGGTFD+++L  +  V EV A+ GD+ LGG+DF H++ D +  +A +  
Sbjct: 163 QQNTRSLVFDLGGGTFDVTVLEYATPVIEVHASAGDNFLGGEDFTHMLVDEVLKRADVAR 222

Query: 256 TSLTAEQQRALINAATQAKIDLTEYMTAELNVLGWQGSLTRE------ELENLIAPLLKK 309
           T+L   +  AL      AK        + L++       TRE      ELE+L  PLL +
Sbjct: 223 TTLNESELAALYACVEAAKCS----NQSPLHIRWQYQEETRECEFYENELEDLWLPLLNR 278

Query: 310 TLLSCRRALKDAGVEADEVLEVVMVGGSTRTPFVREQVGEFFGRTPLTSINPDEVVAIGA 369
             +   +AL+DA ++  ++  +V+VGG+++ P V+      FG+ P  S +P  +VA+GA
Sbjct: 279 LRVPIEQALRDARLKPSQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIVALGA 338

Query: 370 AIQADILAGNKPDAEMLLLDVIPLSLGIET----MGGLVEKIIPRNTTIPVARAQEFTTF 425
           AIQA     ++   E++L D+ P SLG+E     + G+   II RNTT+PV+R + ++T 
Sbjct: 339 AIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTVPVSRVETYSTM 398

Query: 426 KDGQTAMSVHVVQGEREMVDDCRSLARFSLKGIPPMAAGA-AHIRVTYQVDADGLLSVTA 484
              Q +++V+V QGE   V +   +  F    +P    GA   I + +  D +GLL V  
Sbjct: 399 HPEQDSITVNVYQGENHKVKNNILVESFD---VPLKKTGAYQSIDIRFSYDINGLLEVDV 455

Query: 485 LEKSTGVQAEIQVKPSYGLSDDEVTQ--------------MLKDSMAYAK-EDMLARALA 529
           L +   V++ +       LS  ++ +              ML +    AK E++ ARAL 
Sbjct: 456 LLEDGSVKSRVINHSPVTLSAQQIEESRTRLSALKIYPRDMLINRTFKAKLEELWARALG 515

Query: 530 EQRVEADRVIEGLVSALQADGDELLNEQERQ 560
           ++R E  RVI    +ALQ++    ++E  R+
Sbjct: 516 DEREEIGRVITDFDAALQSNDMARVDEVRRR 546