Pairwise Alignments

Query, 244 a.a., tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 228 a.a., predicted rRNA methyltransferase (NCBI) from Escherichia coli BW25113

 Score =  101 bits (251), Expect = 1e-26
 Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 4/182 (2%)

Query: 5   RVKVVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNAQIY 64
           R+ ++LV    + NIG+AARAMK MG S + +VD Q  ++     +A G+ +I  N +++
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 65  PTLEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQHS-VAMVFGRERTGLTN 123
           PTL  ++ D    V T+ARSR        P E    L  +++  S  A+VFGRE +GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 124 DELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQEL 183
           +EL L      VP   +Y SLNL  AV +  Y++      +QQ ++S    +++      
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA---TLIQQPAKSDATADQHQLQALR 178

Query: 184 ER 185
           ER
Sbjct: 179 ER 180