Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 23/262 (8%)

Query: 28  IAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPANLEQIRSALEAKGFGDATVQNFGSARD 87
           I   + TL  ++ + G     G  + V  E+  N+  I+S L    F    + N   AR 
Sbjct: 350 IGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRL-GNSFRITGISNPNEARQ 408

Query: 88  VMVRLRPRDDMAGEALGNQILAAIKEGTGGNVEMRRIEFVGPNVGDELTEAGGLAILVSL 147
           + + LR             ++A I+      VE R I   GP +G +  + G  A L  L
Sbjct: 409 LSLLLR----------AGALIAPIQI-----VEERTI---GPTLGMQNIKQGLEACLAGL 450

Query: 148 LCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQ-IEVDLTIVAALLTVVGYSLND 206
           +  +L++ + F  +    A  AL  ++++ +GI S+L    + +  +A ++  +  +++ 
Sbjct: 451 VVSILFM-IFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDA 509

Query: 207 TIVVFDRIRENFRKMRKEEPAEIMNSSITQTLSRTLITSGTTLFVVIALFTQGGAMIHGF 266
            +++ +RI+E     R  + A  +N       S     + TTL  VI L+  G   I GF
Sbjct: 510 NVLINERIKEELSNGRTVQQA--INEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGF 567

Query: 267 ALALLLGITVGTYSSIYVASAL 288
           A+   +G+    +++I    A+
Sbjct: 568 AITTGIGVATSMFTAIIGTRAI 589



 Score = 30.0 bits (66), Expect = 1e-04
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 30/117 (25%)

Query: 27  MIAASIFTLSTKWL--------NWGLDFTGGT--LIEVGFE------QPANLEQIRSALE 70
           ++A ++   + +WL          GLD  GG   L+EV  +      Q  N++ +RS L 
Sbjct: 89  VVALNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLR 148

Query: 71  AKGFGDATVQ---NFG--------SARDVMVRL---RPRDDMAGEALGNQILAAIKE 113
            KG    TV+   N+G         ARD  +     R RD +     GNQ+ A + +
Sbjct: 149 EKGIPYTTVRKENNYGLSITFRDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTD 205