Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., protein-export membrane protein, SecD/SecF family from Enterobacter asburiae PDN3

 Score = 54.3 bits (129), Expect = 7e-12
 Identities = 59/262 (22%), Positives = 115/262 (43%), Gaps = 23/262 (8%)

Query: 28  IAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPANLEQIRSALEAKGFGDATVQNFGSARD 87
           I   + TL  ++ + G     G  + V  E+  N+  I+S L    F    + N   AR 
Sbjct: 350 IGKPMATLFVEYKDSGKKDANGRAVLVKEEEVINIANIQSRL-GNSFRITGINNPNEARQ 408

Query: 88  VMVRLRPRDDMAGEALGNQILAAIKEGTGGNVEMRRIEFVGPNVGDELTEAGGLAILVSL 147
           + + LR             ++A I+      VE R I   GP +G +  + G  A L  L
Sbjct: 409 LSLLLR----------AGALIAPIQI-----VEERTI---GPTLGMQNIQQGLEACLAGL 450

Query: 148 LCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQ-IEVDLTIVAALLTVVGYSLND 206
           +  +L++ + F  +    A  AL  ++++ +GI S+L    + +  +A ++  +  +++ 
Sbjct: 451 VVSILFM-IFFYKKFGLIATSALIANLVLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDA 509

Query: 207 TIVVFDRIRENFRKMRKEEPAEIMNSSITQTLSRTLITSGTTLFVVIALFTQGGAMIHGF 266
            +++ +RI+E     R  + A  ++       S     + TTL  V+ L+  G   I GF
Sbjct: 510 NVLINERIKEELSNGRSIQQA--IDEGYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGF 567

Query: 267 ALALLLGITVGTYSSIYVASAL 288
           A+   +G+    +++I    A+
Sbjct: 568 AITTGIGVATSMFTAIVGTRAI 589



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 23/132 (17%)

Query: 5   LKADKMIDFMRWSKFAFALSLVMIAAS-IFTLSTKWLNWGLDFTGGT--LIEVGFE---- 57
           L+A + +  +   K+  AL+L       +  +  + +  GLD  GG   L+EV  +    
Sbjct: 74  LRAREALMGVLGDKYVVALNLAPATPRWLAAMKAEPMKLGLDLRGGVHFLMEVDMDTALG 133

Query: 58  --QPANLEQIRSALEAKGFGDATVQ---NFG--------SARDVMV---RLRPRDDMAGE 101
             Q  N++ +RS L  KG    TV+   N+G        +ARD  V     R RD +   
Sbjct: 134 KLQEQNIDSLRSDLRDKGIAYTTVRKEDNYGMSITFRDSAARDQAVDYLTQRHRDLVITS 193

Query: 102 ALGNQILAAIKE 113
              NQ+ A + +
Sbjct: 194 QGSNQLRAVMTD 205