Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Protein translocase subunit SecD from Escherichia coli ECRC62

 Score = 57.8 bits (138), Expect = 7e-13
 Identities = 62/262 (23%), Positives = 116/262 (44%), Gaps = 23/262 (8%)

Query: 28  IAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPANLEQIRSALEAKGFGDATVQNFGSARD 87
           I   + TL  ++ + G     G  + V  E+  N+  I+S L    F    + N   AR 
Sbjct: 350 IGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRL-GNSFRITGINNPNEARQ 408

Query: 88  VMVRLRPRDDMAGEALGNQILAAIKEGTGGNVEMRRIEFVGPNVGDELTEAGGLAILVSL 147
           + + LR             ++A I+      VE R I   GP +G +  E G  A L  L
Sbjct: 409 LSLLLR----------AGALIAPIQI-----VEERTI---GPTLGMQNIEQGLEACLAGL 450

Query: 148 LCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQ-IEVDLTIVAALLTVVGYSLND 206
           L  +L++ + ++ +    A  AL  ++I+ +GI S+L    + +  +A ++  +  +++ 
Sbjct: 451 LVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDA 509

Query: 207 TIVVFDRIRENFRKMRKEEPAEIMNSSITQTLSRTLITSGTTLFVVIALFTQGGAMIHGF 266
            +++ +RI+E     R  + A  ++       S     + TTL  VI L+  G   I GF
Sbjct: 510 NVLINERIKEELSNGRTVQQA--IDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGF 567

Query: 267 ALALLLGITVGTYSSIYVASAL 288
           A+   +G+    +++I    A+
Sbjct: 568 AITTGIGVATSMFTAIVGTRAI 589



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 12/91 (13%)

Query: 5   LKADKMIDFMRWSKFAFALSLVMIAAS-IFTLSTKWLNWGLDFTGGT--LIEVGFE---- 57
           L+A + +  +   K+  AL+L       +  +  + +  GLD  GG   L+EV  +    
Sbjct: 74  LRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALG 133

Query: 58  --QPANLEQIRSALEAKGFGDATVQ---NFG 83
             Q  N++ +RS L  KG    TV+   N+G
Sbjct: 134 KLQEQNIDSLRSDLREKGIPYTTVRKENNYG 164