Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., preprotein translocase subunit SecD from Alteromonas macleodii MIT1002

 Score = 71.6 bits (174), Expect = 4e-17
 Identities = 64/243 (26%), Positives = 118/243 (48%), Gaps = 27/243 (11%)

Query: 49  GTLIEVGFEQPANLEQIRSALEAKGFGDATVQNFGSARDVMVRLRPRDDMAGEALGNQIL 108
           G L+    EQ  ++  IR+ L +K F    + +   ARD+ + LR     AG  +    +
Sbjct: 381 GKLVFEKHEQVISVATIRAQLGSK-FQITGLDSPKEARDLALLLR-----AGALIAP--I 432

Query: 109 AAIKEGTGGNVEMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAV- 167
             ++E T           VGP++G E  E G  AI+  L  +L+++ + ++   A G V 
Sbjct: 433 QIVEERT-----------VGPSLGKENIELGMQAIMYGLAAVLVFMLIYYK---AFGVVA 478

Query: 168 -LALAHDVIITLGIFSILQ-IEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEE 225
            +AL  ++++ +GI S++    + L  +A ++  VG +++  +++F+RIRE  R  R   
Sbjct: 479 NIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIREEIRDGRS-- 536

Query: 226 PAEIMNSSITQTLSRTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVA 285
           P   ++       S  L  + TT    + LF  G   I GF++ L++GI    +++I V 
Sbjct: 537 PQHAIHQGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMIGIATSMFTAILVT 596

Query: 286 SAL 288
             +
Sbjct: 597 RVI 599