Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 855 a.a., bifunctional preprotein translocase subunit SecD/SecF from Alteromonas macleodii MIT1002

 Score =  177 bits (448), Expect = 1e-48
 Identities = 111/320 (34%), Positives = 175/320 (54%), Gaps = 13/320 (4%)

Query: 7   ADKM--IDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPANLEQ 64
           +DK+  I+F+   K A A+S+V+   SI   +   L++G+DFTGGT+IE+        ++
Sbjct: 538 SDKLSGINFLAKRKIALAVSVVLTVLSIGLFAKPGLHYGVDFTGGTMIELT-APTLTTDE 596

Query: 65  IRSALEAKGFGDATVQNFGSARDVMVRLRPRDDMAGE-----ALGNQILAAIKEGTGGNV 119
           +R+ +E+ GF    +Q +GS    ++R  P  D +GE     A     L          V
Sbjct: 597 LRNVIESNGFDQIAIQEYGSEHHYLLRA-PVLDSSGELENSNAKQTDALKRAISQADSEV 655

Query: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179
              +I+ VGP V     E   LA+L++   +LLY+  RFE   A+ A+L +  D+  T+G
Sbjct: 656 SFDKIDMVGPKVSGGFAELSILALLIAGGGMLLYLWARFEAHFASAALLTVILDLTKTIG 715

Query: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEPAEIMNSSITQTLS 239
            F++  IE +LT VAALL ++GYS+ND +VV DRIRE  R    +  A+ +N ++  TLS
Sbjct: 716 FFALTGIEFNLTAVAALLALIGYSINDKVVVLDRIRELLRLDPNKPSADTINEAVNSTLS 775

Query: 240 RTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITREH- 298
           RT+ TS TTL  ++ +   GG  +  FA+ ++  + +GT S++++ S L   LG  RE  
Sbjct: 776 RTVFTSVTTLLALLPMAIFGGDAVESFAVPMVFAVVIGTSSTLFITSTLLYLLGSRREKQ 835

Query: 299 ---LLPPQVEKEGAELDEMP 315
               L P  E+  A L  +P
Sbjct: 836 GKAQLKPTAEEIKASLSHIP 855



 Score = 61.6 bits (148), Expect = 6e-14
 Identities = 41/166 (24%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 127 VGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQI 186
           VGP++G +  + G  + +   L +L ++ V    R  A A  AL  ++ +  G  ++   
Sbjct: 348 VGPDLGSDAIQTGVESGVAGALLVLAFM-VAIYGRWGAIASFALCINMALVFGALTLFGA 406

Query: 187 EVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEPAEIMNSSITQTLSRTLITSG 246
            + L  +A L+  +G +++  I++ +RIRE  +K R    A  +     +  +  + ++ 
Sbjct: 407 TLTLPGIAGLILTMGMAVDANILINERIREESKKGRPA--ASAIEVGFDKAFATIVDSNF 464

Query: 247 TTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKL 292
           TTL  V  LF  G   I GFA+ + LG+    ++++ +   L L++
Sbjct: 465 TTLIAVSLLFMFGSGPIKGFAITIALGLVSSVFTAVALTKMLMLRV 510