Pairwise Alignments

Query, 315 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., protein-export membrane protein SECD from Agrobacterium fabrum C58

 Score =  228 bits (580), Expect = 5e-64
 Identities = 112/281 (39%), Positives = 182/281 (64%), Gaps = 3/281 (1%)

Query: 11  IDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQ-PANLEQIRSAL 69
           I FMR+ +  F ++ V++ A +     K LN G+DF GG++IEV  +Q  A+L  IR  L
Sbjct: 547 IPFMRYRRVVFMITGVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEADLADIRERL 606

Query: 70  EAKGFGDATVQNFGSARDVMVRLRPRDDMAGEALGNQILAAIKEGTGGNVEMRRIEFVGP 129
                G+   QNFGS +DV++R++ +D   GE      +  ++       + RR+E VGP
Sbjct: 607 NQLNLGEIQAQNFGSPQDVLIRIQAQD--GGENAEQSAITLVRGELEDKYDFRRVEVVGP 664

Query: 130 NVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQIEVD 189
            V  +LT    + +L+++  I++Y+ VRFEW+ A GAV+++ HDV+ T+G+F  L IE +
Sbjct: 665 AVSGDLTVTSTIGVLLAMAAIMVYIWVRFEWQFALGAVISMVHDVVFTIGLFVFLGIEFN 724

Query: 190 LTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEPAEIMNSSITQTLSRTLITSGTTL 249
           LT +AA+LT++GYSLNDT+V++DR+REN R+ +K   + I++ S+ QTLSRT++T  T L
Sbjct: 725 LTSIAAILTIIGYSLNDTVVIYDRVRENLRRYKKMPLSMIIDVSLNQTLSRTILTGLTVL 784

Query: 250 FVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALAL 290
             ++AL+  GG +I  F  A+L G+ +G +SS+Y+A+ + +
Sbjct: 785 LALLALYLFGGEVIRSFTFAMLFGVGIGVFSSVYIAAPVLI 825



 Score = 62.8 bits (151), Expect = 3e-14
 Identities = 36/156 (23%), Positives = 87/156 (55%), Gaps = 5/156 (3%)

Query: 127 VGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQI 186
           VGP++G++   AG  A  +  + +L+++ V + +     A +AL  +V++ + + S++  
Sbjct: 362 VGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGF-FGLLANIALIVNVVMLIAVLSVIGS 420

Query: 187 EVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEPA-EIMNSSITQTLSRTLITS 245
            + L  +A ++  +G +++  +++++RIRE   +++  +P  + +++  T+  +  +  +
Sbjct: 421 TLTLPGIAGIVLTIGMAVDSNVLIYERIRE---EVKSGKPLIQALDNGFTRAFATIIDAN 477

Query: 246 GTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSS 281
            TTL V   LF  G   + GFA+ L +GI    +++
Sbjct: 478 LTTLIVASVLFYMGTGPVKGFAVTLAVGIITTVFTA 513