Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., preprotein translocase subunit SecD from Pseudomonas simiae WCS417

 Score =  573 bits (1477), Expect = e-168
 Identities = 304/630 (48%), Positives = 419/630 (66%), Gaps = 21/630 (3%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK 59
           MLN+YPLWKY++++  +A+  +Y+ PN+Y +DPAIQI+GA     V+ + L+  + ALN 
Sbjct: 1   MLNKYPLWKYVLILAVLAIGFIYSAPNLYPDDPAIQISGASTTLQVNQADLERASKALND 60

Query: 60  AQLSQKSIALENGSI--LVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIG 117
           A +  K+  L  G+   L+R    + Q+ A+D++ + +G D +VALNLA +TP WL SIG
Sbjct: 61  AGIQVKAATLAAGAKGGLLRLTKQEDQLPAKDVVRKVMGDDYVVALNLAQTTPQWLRSIG 120

Query: 118 AAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEV 177
           A PMKLGLDL GGVHFL+EVDMD A++  +   E   +S LR E++RYR++  L+ A+++
Sbjct: 121 AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKERLRYRSLPQLNGAIQL 180

Query: 178 TLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILR 237
              D     Q + L+     D     ++ +G+ VL    + A++ EIR Y+++QN+T +R
Sbjct: 181 GFSDEASREQARALIRKNFNDFDIVPADLNGQAVLRLAMSPAKIAEIREYSIKQNLTTVR 240

Query: 238 NRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAA 297
           NRVNELGVAEP+VQRQGA RIVVELPGVQDTA AK ILG TA LEFR       LAA   
Sbjct: 241 NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR-------LAAEPG 293

Query: 298 GRAPAGSEIKFDRNGRPVVLKKR-VILGGSSITDASSSADEYGRPQVNISLDSEGGNKMS 356
                  E +F    RP  L +R +I+ G  +TDA +   E+G P+VNI LD  GG  MS
Sbjct: 294 ATRATAEEFEFREGNRPPALIERGLIITGDQVTDAKAGFGEHGTPEVNIRLDGHGGELMS 353

Query: 357 AFSKKNIGKLMATVFAEYKD---------SGKRSPEGKVILTKHEEVINQATIQSALGRN 407
             ++ N+G+ MA +F E +          +G           + +++I+ ATIQS LG  
Sbjct: 354 RATRSNVGRSMAVIFIEQRPITTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQ 413

Query: 408 FRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVM 467
           FRITG++   E+  LALLLRAG L AP+   EERTIGPS+G  NI  G+ A +WGM+ V 
Sbjct: 414 FRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAALWGMLFVS 473

Query: 468 LFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIF 527
           LF +  YR FG+IA +AL  N+V+++ +MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF
Sbjct: 474 LFIIAIYRFFGVIATVALAGNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIF 532

Query: 528 ERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIG 587
            RIREE+  G   Q+AI++G+  AF+ I D+N+TTL+   ILFA+GTG +KGFAVT+S+G
Sbjct: 533 SRIREEIAAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLG 592

Query: 588 ILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617
           I TSMFTAI+ TR +VNL++GG+   KL I
Sbjct: 593 IFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 622