Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., preprotein translocase subunit SecF from Pseudomonas simiae WCS417

 Score = 68.2 bits (165), Expect = 5e-16
 Identities = 41/186 (22%), Positives = 93/186 (50%), Gaps = 4/186 (2%)

Query: 414 DSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLY 473
           + P   H +A  L+      P S+     +GP +G++  D G    +  +V +M++    
Sbjct: 89  EDPQLGHQVAEALQKVGGDNPASVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFR 148

Query: 474 YR-KFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIRE 532
           ++ KFG+ A ++L+ ++++ +G+++     T  L  +A ++  +G +++  +++F+R+RE
Sbjct: 149 FQWKFGVGAIVSLIHDVIVTVGILAYFQ-ITFDLTVLAAVLAIIGYSLNDTIVVFDRVRE 207

Query: 533 ELREGKNPQ--QAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILT 590
             R  +     + I+             +I+TL+    L   G   + GF++ L IG+L 
Sbjct: 208 NFRVLRKATLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLWGFSLALFIGVLA 267

Query: 591 SMFTAI 596
             +++I
Sbjct: 268 GTYSSI 273



 Score = 27.7 bits (60), Expect = 7e-04
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATR-IVVELPG 264
           FT   L E+  Y    ++T++R+ + + G  E +VQ  GAT  ++V +PG
Sbjct: 40  FTGGTLIEL-TYEKPADVTLVRSELVKAGYHEAIVQSFGATTDLLVRMPG 88