Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Protein translocase subunit SecD from Variovorax sp. SCN45

 Score =  518 bits (1334), Expect = e-151
 Identities = 281/619 (45%), Positives = 404/619 (65%), Gaps = 25/619 (4%)

Query: 2   LNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNKA 60
           +NRYP+WKY ++++ + V  +YALPN +GE PA+Q++ A+    VD ST   V +AL  A
Sbjct: 1   MNRYPVWKYTIIVIVLLVGLIYALPNFFGEAPAVQVSAAKTVVKVDASTQTRVEEALKAA 60

Query: 61  QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDK-----IVALNLAPSTPYWLES 115
            L+   I L+  S+  RF  TD Q+ ARD +  AL  D       VALNL   +P WL +
Sbjct: 61  GLTPDLITLDGTSLRARFATTDDQLKARDAVQRALVPDANDPPYTVALNLVSRSPKWLTA 120

Query: 116 IGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAV 175
           + A PM LGLDLRGGV FL++VDM  A++K         R+  RD+ IR  A+      V
Sbjct: 121 LHAFPMYLGLDLRGGVDFLLQVDMKGAIDKKAESFASDLRTTFRDKNIRGTAVSRNGQTV 180

Query: 176 EVTLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITI 235
           EV+ RDA  L   K L++ + +D++ T S+    + LVA       + +++ A++QNIT 
Sbjct: 181 EVSFRDAASLDAAKRLIQDQFQDLSTTDSQDGSNWRLVASIKPEAARRLQDAALKQNITT 240

Query: 236 LRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAA 295
           L NR+NELGVAEP++Q+QG  RIVV+LPGVQDTA+AKEILG TATLE R VD+ A+  AA
Sbjct: 241 LHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKEILGRTATLEMRMVDESAEGRAA 300

Query: 296 --AAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEY-GRPQVNISLDSEGG 352
               G  P GSE   DR GRPV++KK+V++ G ++TDA    D+   +P+V++++D++GG
Sbjct: 301 ELGGGPVPFGSEKFLDRQGRPVIVKKQVLVTGENLTDAQPGFDQQSNQPKVDLTMDAKGG 360

Query: 353 NKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITG 412
             M   S++N  K MA +  E         +GK       EV+   +I   LG  F+++G
Sbjct: 361 RIMRDVSRENYKKRMAMLIFE---------KGK------GEVLTAPSINGELGNRFQVSG 405

Query: 413 IDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVL 472
             +  EA++LALLLRAG+L AP+ I++ERTIGP++G  NI+ G ++ ++G +A+M+F   
Sbjct: 406 SMTVVEANDLALLLRAGSLAAPMEIIQERTIGPTLGADNIEKGFKSVMYGFLAIMVFMCA 465

Query: 473 YYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIRE 532
           YY  FG+ ++IAL  NL+L++ ++SM+  AT+TLPGIA + L +G+A+D+NVLI ER+RE
Sbjct: 466 YYALFGLFSSIALAVNLMLLVAILSMLQ-ATLTLPGIAAMALAIGVAIDSNVLINERVRE 524

Query: 533 ELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSM 592
           ELR G +PQ AIH GY  A+ TI D+N+TTLI  I L A G+G ++GFAV   IGI+TSM
Sbjct: 525 ELRNGASPQAAIHAGYERAWGTILDSNVTTLIAGIALLAFGSGPVRGFAVVHCIGIVTSM 584

Query: 593 FTAIVGTRCIVNLLYGGKR 611
           F+A+  +R +VN  YG K+
Sbjct: 585 FSAVFFSRGLVNFWYGQKK 603