Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

 Score =  484 bits (1245), Expect = e-141
 Identities = 262/609 (43%), Positives = 382/609 (62%), Gaps = 19/609 (3%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKA 60
           ++N Y  WKY++++ TI +  L A+P  YGE P+IQ+      SV +  +  +T  LNK 
Sbjct: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSV-LRNVPELTQLLNKQ 71

Query: 61  QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAP 120
            +    I  +  +  + F +   Q  AR+ +   + +   +  +     P WL ++G +P
Sbjct: 72  NIQADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSP 131

Query: 121 MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPL-SDAVEVTL 179
           +KLGLDLRGGV FL+ VD+D A ++      +A +  LR E++R   ++ + +DA EV  
Sbjct: 132 IKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEVKT 191

Query: 180 RDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNR 239
              + L+  +  L+  +R          G   L  + ++    E +   ++QN+ I+R+R
Sbjct: 192 EQPQALSHVRKYLQENYRGWEIR----QGSDQLQVQPSQQNKSEFQTATIQQNLKIMRDR 247

Query: 240 VNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGR 299
           + ELG+ E LVQRQG   I +ELPGVQD ++AK ++GATA+L F E     D  +     
Sbjct: 248 IEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSY---- 303

Query: 300 APAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFS 359
                 I  D NGRPV+L KR +L G  I +A +  D  G  +VNISLD  GG  MS FS
Sbjct: 304 ---DDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFS 360

Query: 360 KKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEA 419
            K+IGK MATV+ EYK + +    G+ +  + E+VI+ ATIQS LG  FRITG  S  EA
Sbjct: 361 GKHIGKPMATVYREYKTNAR----GETV--RSEKVISVATIQSQLGSQFRITGAGSMEEA 414

Query: 420 HNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGM 479
             LALLLRAG+L AP++IVEERTIG S+G++NI  G  A   GM   + F  L+YR+ G 
Sbjct: 415 QQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGW 474

Query: 480 IANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKN 539
           +AN+AL+ N+  ++G+++++PGA +TLPGIAG+VLTVGMAVD NVLIFERIR++L EG+N
Sbjct: 475 VANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRN 534

Query: 540 PQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGT 599
             QAI  G+ +AFSTI DANITT+ITA+IL+++G G I+GFA+TL +G+LTSMF+ +  +
Sbjct: 535 FAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFAS 594

Query: 600 RCIVNLLYG 608
           R ++NL++G
Sbjct: 595 RALINLVWG 603