Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., Protein translocase subunit SecD from Sphingobium sp. HT1-2

 Score =  296 bits (758), Expect = 2e-84
 Identities = 188/503 (37%), Positives = 283/503 (56%), Gaps = 45/503 (8%)

Query: 121 MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLR--------------DEKIRYR 166
           + LGLDL GG H L+E       ++ ++  EE  R++LR              D K+ + 
Sbjct: 44  VNLGLDLAGGSHLLLEASTQDVAKQRLANMEEQVRTELRRGETKIAIGDISSRDGKLSFM 103

Query: 167 AIRPLSDAVEVTLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRN 226
              P    V+  +     L Q   L   +  ++    S +     +V   T+A +     
Sbjct: 104 VRNP--SEVDAAVERIRPLTQGAGLTGQRDFNVEVVNSST-----IVITPTQAGIDNAVK 156

Query: 227 YAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREV 286
            A++    ++R R++E+G  EP +Q+QGA RIVV++PG+QD    K +LG TA LEF+ V
Sbjct: 157 SAMQVATEVIRKRIDEMGTREPTIQQQGANRIVVQVPGLQDPKALKALLGQTAKLEFKLV 216

Query: 287 DDKADLAAAAAGRAPAGSEI-KFDRN--GRPVV-LKKRVILGGSSITDASSSADEY-GRP 341
           D  A+ +  A GRAP GSE+  +  N  G P++ + ++V++ G  +TDA  + D+    P
Sbjct: 217 DMSANPSEVAQGRAPVGSEVLPYPTNPAGPPMIAVHRQVMVSGEELTDAQQTYDQQTNEP 276

Query: 342 QVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQ 401
            V I  +  GGNK +  + +N+ +  A +            +GKV+   +   IN+    
Sbjct: 277 NVTIRFNGSGGNKFAKVTSQNVNRPFAIIL-----------DGKVLSAPN---INEPI-- 320

Query: 402 SALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIW 461
             LG +  I+G  +   A+ LA+ LR+G L     +VEERT+GP +G  +I  G+ A I 
Sbjct: 321 --LGGSATISGSFTVEGANQLAIALRSGKLPVNFVVVEERTVGPGLGADSIRAGLVASIV 378

Query: 462 GMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVD 521
            +VAV  F  + Y +FGM AN+A+  N+++I+GVM ++ GAT+TLPGIAG VLT+G AVD
Sbjct: 379 AVVAVAAFMFVSYGRFGMYANLAVAINVLVILGVMGIL-GATLTLPGIAGFVLTIGTAVD 437

Query: 522 ANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 581
           ANVLI+ERIREE R G+   QAI  GY  A  TI +AN+T  I   I+ A+G+G +KGFA
Sbjct: 438 ANVLIYERIREERRRGRGVVQAIEFGYKEASRTIFEANVTHAIAGGIMLALGSGPVKGFA 497

Query: 582 VTLSIGILTSMFTAIVGTRCIVN 604
           + L IGI TS+FTA+  TR +V+
Sbjct: 498 IVLLIGIATSVFTAVTFTRVLVS 520