Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

 Score =  591 bits (1524), Expect = e-173
 Identities = 315/627 (50%), Positives = 425/627 (67%), Gaps = 21/627 (3%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNK 59
           MLN+YPLWKY +++L + V  +Y+ PN+Y +DPA+QI+GA  A  V+ + LD V+ AL  
Sbjct: 1   MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVD 60

Query: 60  AQLSQKSIAL-ENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGA 118
           A+++ K  +L E GS L+R  + + Q+ A+D++ +ALG D +VALNLA +TP WL ++GA
Sbjct: 61  AKIAVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLGA 120

Query: 119 APMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVT 178
           +PMKLGLDL GGVHFL+EVDMD AM   +   E   ++ LR E++RYR++      + + 
Sbjct: 121 SPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDGGIMLG 180

Query: 179 LRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRN 238
             D     Q + L+     D   TT++ +   VL    T+A++ EIR Y+++QN+T +RN
Sbjct: 181 FADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAKVAEIREYSIKQNLTTVRN 240

Query: 239 RVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAG 298
           RVNELGVAEPLVQRQGA RIVVELPGVQDTA AK ILG TA LEFR          A  G
Sbjct: 241 RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFR--------FGAEPG 292

Query: 299 RAPAGSEI-KFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSA 357
            + A +E+ +F   GR   +++ +I+ G  +TDA +S DE+GRPQVNI LD  GG  MS 
Sbjct: 293 ASKATTEVFEFREGGRSAAVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGELMSR 352

Query: 358 FSKKNIGKLMATVFAEYKD---------SGKRSPEGKVILTKHEEVINQATIQSALGRNF 408
            ++ N+G+ MA +F E K           G           + +++I+ ATIQS LG  F
Sbjct: 353 ATRSNVGRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQF 412

Query: 409 RITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVML 468
           RITG++   E+  LALLLRAG L AP+   EERTIGPS+G  NI  GI A +WGM+ V L
Sbjct: 413 RITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSL 472

Query: 469 FTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFE 528
           F +  YR FG++A IAL  N+VL++ +MS++ GAT+TLPGIAGIVLT+GMAVDANVLIF 
Sbjct: 473 FIIAIYRAFGVLATIALAGNMVLLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFS 531

Query: 529 RIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGI 588
           RIREE+  G + Q+AIH+G+  A+S I DAN+TTL+   ILFA+GTG +KGFAVT+S+GI
Sbjct: 532 RIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGI 591

Query: 589 LTSMFTAIVGTRCIVNLLYGGKRINKL 615
            TSMFTA++ TR +VNL  GG+ I KL
Sbjct: 592 FTSMFTAVMVTRALVNLTCGGRDIKKL 618