Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  502 bits (1293), Expect = e-146
 Identities = 273/627 (43%), Positives = 406/627 (64%), Gaps = 30/627 (4%)

Query: 2   LNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNKA 60
           +NRYPLWKY ++++ + ++ALYALPN++GE PA+Q++ AR    +D  T+  V  AL   
Sbjct: 1   MNRYPLWKYAIILIVLLISALYALPNLFGESPAVQVSAARSTVRIDAGTVTRVEQALAAQ 60

Query: 61  QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDK-----IVALNLAPSTPYWLES 115
            +    I L+  S+  RF+ TD Q+ ARD + +A   D      +VALNL P TP WL S
Sbjct: 61  NIQSNRIQLDANSVKARFDSTDDQLKARDALEKAFNPDPADASHVVALNLLPRTPSWLAS 120

Query: 116 IGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAV 175
           +GA+PM LGLDLRGGVHF+++VDM AA+ +         R+ LR++ +R+  I      +
Sbjct: 121 LGASPMYLGLDLRGGVHFMLQVDMQAALLRRADVLATDLRTLLREKGLRHGGINRSGQTI 180

Query: 176 EVTLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITI 235
           E+   DA+ L   + L+ ++  D+  T +     F LV   +    + ++  A++QNIT 
Sbjct: 181 ELRAGDAQTLGAARDLIRTQFTDLQLTETAD---FRLVGTISPEAARRVQEQALKQNITT 237

Query: 236 LRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAA 295
           L NR+NELGVAEP++Q+QGA RIVV+LPGVQDTA+AK+ILG TATLE R VD+  D  AA
Sbjct: 238 LHNRINELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDILGRTATLEVRMVDESVDAQAA 297

Query: 296 AAGRAPA--GSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQ-VNISLDSEGG 352
           A G  P   G+E   +R G+ VV+K+ V+L G ++TDA +  D   +   V+++LD++G 
Sbjct: 298 ARGTGPVPFGAERYPERGGQSVVVKREVLLTGENLTDAQAGFDSQTQEAAVHLTLDAKGA 357

Query: 353 NKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRN-FRIT 411
                 +++N+GK MA +  E K  G              EV+    I+  +G    +I+
Sbjct: 358 RVFRDVTRENVGKRMAIILFE-KGRG--------------EVVTAPVIRGEIGGGRVQIS 402

Query: 412 GIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTV 471
           G  +  EA++ ALLLRAG+L AP+ I+EERTIGPS+G +NI  G  + +WG +A+++F  
Sbjct: 403 GAMTTVEANDTALLLRAGSLAAPMEIIEERTIGPSLGAENITKGFHSVLWGFIAIVVFMC 462

Query: 472 LYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIR 531
           +YY  FG+ ++IAL  N++L++ ++SM+  AT+TLPGIA + L +GMA+D+NVLI ER+R
Sbjct: 463 VYYAMFGVFSSIALGFNVLLLVSLLSMLQ-ATLTLPGIAAMALALGMAIDSNVLINERVR 521

Query: 532 EELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTS 591
           EELR G +PQ AI+ GY +A+STI D+N+T+LI  I L   G+G ++GFAV   +GILTS
Sbjct: 522 EELRRGSSPQMAINAGYDHAWSTILDSNVTSLIAGIALLIFGSGPVRGFAVVHCLGILTS 581

Query: 592 MFTAIVGTRCIVNLLYG-GKRINKLSI 617
           MF+++  +R +VNL YG  K++  +SI
Sbjct: 582 MFSSVFFSRGVVNLWYGRQKKLKTVSI 608