Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., protein translocase subunit SecD from Magnetospirillum magneticum AMB-1

 Score =  344 bits (882), Expect = 6e-99
 Identities = 203/523 (38%), Positives = 308/523 (58%), Gaps = 33/523 (6%)

Query: 100 IVALNLAPSTPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLR 159
           +++ + A   P+WL+     P+ LGLDL+GG + L+EVD      + ++   E  R+ LR
Sbjct: 27  LLSRDQADRMPHWLQ-----PVSLGLDLQGGSYLLLEVDTAYVFREQLTSLVEGVRTTLR 81

Query: 160 DEKIRYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEA 219
            EKI+Y  +    D V V + +A++ A+ +  L     +    T + DG  VL  K++E 
Sbjct: 82  KEKIKYSDLGARGDQVSVRIIEADERAKAREFLRKIDAEAAIETRD-DGSMVL--KYSEQ 138

Query: 220 RLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATA 279
            ++  +  A+EQ++ I+R R++ELG  EP +QRQG  RIVV+LPGV+D  R K +LG TA
Sbjct: 139 AVKARKTAAIEQSLEIVRRRIDELGTREPSIQRQGEDRIVVQLPGVKDPDRIKALLGKTA 198

Query: 280 TLEFREVDDKADLAAAAAGRAPAGSEI---KFDRNGRP--VVLKKRVILGGSSITDASSS 334
            L F  +DD      A  GR P GS +        G P   V++KR+ +GG  + D+ ++
Sbjct: 199 KLTFHLLDDSTGADEAQKGRVPPGSMLLPSAEKERGMPESYVVRKRIEVGGDMLVDSKAT 258

Query: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394
             E GRP V+    + G  K    +++N GK +A V  E   S  R  E           
Sbjct: 259 YSE-GRPVVSFRFSAAGAKKFGDATRENAGKFLAIVLDEKVISAPRINE----------- 306

Query: 395 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454
                    LG +  I+G  S  +A +L+LLLRAGAL AP+ ++EERT+GP +G  +I  
Sbjct: 307 -------PILGGSGIISGSFSVQQAQDLSLLLRAGALPAPLQVLEERTVGPDLGADSIQA 359

Query: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514
           G  A + G+  V++  ++ Y   G +A++A++ NL+L++  +S + GAT+TLPGIAGIVL
Sbjct: 360 GAVASLLGLALVVVLMIIVYGSLGALADLAMVLNLILLLASLSAL-GATLTLPGIAGIVL 418

Query: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574
           T+GMAVDANVLI+ER+REE R G++   AI  GY  AF TI DA++TTL+ A +LF  G+
Sbjct: 419 TMGMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVAAALLFQFGS 478

Query: 575 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617
           G ++GFAVTL++G+L S+FTA++  R +V      +R+  L +
Sbjct: 479 GPVRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLKTLPL 521



 Score = 32.0 bits (71), Expect = 7e-05
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 24/114 (21%)

Query: 2   LNRYPLWKYLMVMLTIAVAALYALPNIYGEDPA-------------IQITGARGASVDMS 48
           +N +P WK  +V +      ++A+PN+   D A             + + G     +++ 
Sbjct: 1   MNHFPKWKIALVAIVSLFGIVFAVPNLLSRDQADRMPHWLQPVSLGLDLQGGSYLLLEVD 60

Query: 49  T-----------LDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDII 91
           T           ++ V   L K ++    +      + VR  + D +  AR+ +
Sbjct: 61  TAYVFREQLTSLVEGVRTTLRKEKIKYSDLGARGDQVSVRIIEADERAKAREFL 114