Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  730 bits (1884), Expect = 0.0
 Identities = 380/607 (62%), Positives = 467/607 (76%), Gaps = 4/607 (0%)

Query: 12  MVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKAQLSQKSIALEN 71
           M+++ I V  LYALPN+YGEDPA+QITG RG +    TL  V   L + ++  KS+ALE 
Sbjct: 1   MLVVVIIVGLLYALPNLYGEDPAVQITGVRGVAASEQTLIQVQKTLQEEKIPAKSVALEE 60

Query: 72  GSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAPMKLGLDLRGGV 131
           G+IL RF+ TDTQ+ AR+ +   LG   +VALNLAP+TP WL +I A PMKLGLDLRGGV
Sbjct: 61  GAILARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLRGGV 120

Query: 132 HFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSD-AVEVTLRDAEQLAQTKL 190
           HFLMEVD+D A+ KL  Q  ++ RSDLR++ I Y  +R  ++  + +T RD++   +   
Sbjct: 121 HFLMEVDIDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKARDEAIA 180

Query: 191 LLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRVNELGVAEPLV 250
            L  +HRD+  ++   +    L A  T+ARL E R YAV+QNI ILRNRVN+LGVAEP+V
Sbjct: 181 YLTPRHRDLVISSQSGNQ---LRAVMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVV 237

Query: 251 QRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAGSEIKFDR 310
           QRQGA RIVVELPG+QDTARAKEILGATATLEFR V+   D AAAAAGR P  SE+K  R
Sbjct: 238 QRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTR 297

Query: 311 NGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATV 370
            G+PVVL KRVIL G  ITD++SS DEY +PQVNISLDS GGN MS F+K NIGK MAT+
Sbjct: 298 EGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATL 357

Query: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430
           F EYKDSGK+   G+ +L K EEVIN A IQS LG +FRITGI +P EA  L+LLLRAGA
Sbjct: 358 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGA 417

Query: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLV 490
           LIAPI IVEERTIGP++G QNI  G++AC+ G+V  +LF + +Y+KFG+IA  AL+ANLV
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLV 477

Query: 491 LIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIHQGYAN 550
           LI+G+MS++PGAT+++PGIAGIVLT+ +AVDANVLI ERI+EEL  G+  QQAI++GYA 
Sbjct: 478 LIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAG 537

Query: 551 AFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGK 610
           AFS+I DANITTLI  IIL+AVGTGAIKGFA+T  IG+ TSMFTAI+GTR IVNLLYGGK
Sbjct: 538 AFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGK 597

Query: 611 RINKLSI 617
           R+ KLSI
Sbjct: 598 RVTKLSI 604