Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., protein export protein SecD (NCBI) from Escherichia coli BW25113

 Score =  752 bits (1941), Expect = 0.0
 Identities = 387/618 (62%), Positives = 480/618 (77%), Gaps = 4/618 (0%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKA 60
           MLNRYPLWKY+M+++ I +  LYALPN++GEDPA+QITGARG +    TL  V   L + 
Sbjct: 1   MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEE 60

Query: 61  QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAP 120
           +++ KS+ALE G+IL RF+ TDTQ+ AR+ +   +G   +VALNLAP+TP WL +I A P
Sbjct: 61  KITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEP 120

Query: 121 MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSD-AVEVTL 179
           MKLGLDLRGGVHFLMEVDMD A+ KL  Q  ++ RSDLR++ I Y  +R  ++  + +T 
Sbjct: 121 MKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITF 180

Query: 180 RDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNR 239
           RDA+   +    L  +H D+  +   S G   L A  ++ARL E R YAV+QNI ILRNR
Sbjct: 181 RDAKARDEAIAYLSKRHPDLVIS---SQGSNQLRAVMSDARLSEAREYAVQQNINILRNR 237

Query: 240 VNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGR 299
           VN+LGVAEP+VQRQGA RIVVELPG+QDTARAKEILGATATLEFR V+   D AAAA+GR
Sbjct: 238 VNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGR 297

Query: 300 APAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFS 359
            P  SE+K  R G+PVVL KRVIL G  ITD++SS DEY +PQVNISLDS GGN MS F+
Sbjct: 298 VPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFT 357

Query: 360 KKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEA 419
           K NIGK MAT+F EYKDSGK+   G+ +L K EEVIN A IQS LG +FRITGI++P EA
Sbjct: 358 KDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEA 417

Query: 420 HNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGM 479
             L+LLLRAGALIAPI IVEERTIGP++G QNI+ G++AC+ G++  +LF +++Y+KFG+
Sbjct: 418 RQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGL 477

Query: 480 IANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKN 539
           IA  AL+ANL+LI+G+MS++PGAT+++PGIAGIVLT+ +AVDANVLI ERI+EEL  G+ 
Sbjct: 478 IATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRT 537

Query: 540 PQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGT 599
            QQAI +GY  AFS+I DANITTLI  IIL+AVGTGAIKGFA+T  IG+ TSMFTAIVGT
Sbjct: 538 VQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGT 597

Query: 600 RCIVNLLYGGKRINKLSI 617
           R IVNLLYGGKR+ KLSI
Sbjct: 598 RAIVNLLYGGKRVKKLSI 615