Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., protein-export membrane protein, SecD/SecF family from Enterobacter asburiae PDN3

 Score = 55.8 bits (133), Expect = 3e-12
 Identities = 33/157 (21%), Positives = 81/157 (51%), Gaps = 4/157 (2%)

Query: 443 IGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANLVLIIGVMSMIPG 501
           +GPS+G      G  A +  +++++++    +  +      IAL  ++V+ +G++S+   
Sbjct: 134 VGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVVITMGILSLFH- 192

Query: 502 ATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKN--PQQAIHQGYANAFSTIADAN 559
             + L  +A ++  +G +++ ++++ +RIRE  R+ +   P +  +             +
Sbjct: 193 IEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITS 252

Query: 560 ITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAI 596
            TTL+  ++LF  G   ++GF++T+ IG+     ++I
Sbjct: 253 GTTLMVILMLFLFGGPVLEGFSLTMLIGVTIGTASSI 289



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 236 LRNRVNELGVAEPLVQRQGATR-IVVELPGVQDTARAKEI 274
           +R  + + G  EPL+Q  G++R I+V +P V D   ++E+
Sbjct: 71  MRLSLQKAGFEEPLLQNFGSSRDIMVRMPPVHDANGSQEL 110