Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Protein translocase subunit SecD from Escherichia coli ECRC62

 Score =  728 bits (1879), Expect = 0.0
 Identities = 377/607 (62%), Positives = 469/607 (77%), Gaps = 4/607 (0%)

Query: 12  MVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKAQLSQKSIALEN 71
           M+++ I +  LYALPN++GEDPA+QITGARG +    TL  V   L + +++ KS+ALE 
Sbjct: 1   MLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEE 60

Query: 72  GSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAPMKLGLDLRGGV 131
           G+IL RF+ TDTQ+ AR+ +   +G   +VALNLAP+TP WL +I A PMKLGLDLRGGV
Sbjct: 61  GAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGV 120

Query: 132 HFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSD-AVEVTLRDAEQLAQTKL 190
           HFLMEVDMD A+ KL  Q  ++ RSDLR++ I Y  +R  ++  + +T RDA+   +   
Sbjct: 121 HFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIA 180

Query: 191 LLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRVNELGVAEPLV 250
            L  +H D+  +   S G   L A  ++ARL E R YAV+QNI ILRNRVN+LGVAEP+V
Sbjct: 181 YLSKRHPDLVIS---SQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVV 237

Query: 251 QRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAGSEIKFDR 310
           QRQGA RIVVELPG+QDTARAKEILGATATLEFR V+   D AAAA+GR P  SE+K  R
Sbjct: 238 QRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTR 297

Query: 311 NGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATV 370
            G+PVVL KRVIL G  ITD++SS DEY +PQVNISLDS GGN MS F+K NIGK MAT+
Sbjct: 298 EGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATL 357

Query: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430
           F EYKDSGK+   G+ +L K EEVIN A IQS LG +FRITGI++P EA  L+LLLRAGA
Sbjct: 358 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 417

Query: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLV 490
           LIAPI IVEERTIGP++G QNI+ G++AC+ G++  +LF +++Y+KFG+IA  AL+ANL+
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLI 477

Query: 491 LIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIHQGYAN 550
           LI+G+MS++PGAT+++PGIAGIVLT+ +AVDANVLI ERI+EEL  G+  QQAI +GY  
Sbjct: 478 LIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRG 537

Query: 551 AFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGK 610
           AFS+I DANITTLI  IIL+AVGTGAIKGFA+T  IG+ TSMFTAIVGTR IVNLLYGGK
Sbjct: 538 AFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGK 597

Query: 611 RINKLSI 617
           R+ KLSI
Sbjct: 598 RVKKLSI 604