Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., protein translocase subunit SecF from Dickeya dianthicola ME23

 Score = 56.6 bits (135), Expect = 2e-12
 Identities = 32/157 (20%), Positives = 80/157 (50%), Gaps = 4/157 (2%)

Query: 443 IGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANLVLIIGVMSMIPG 501
           +GPS+G      G  A +  ++ ++++    +  +      IAL  ++++ +GV+S+   
Sbjct: 134 VGPSVGADLAQTGAMALMAALICILVYVGFRFEWRLAAGVVIALAHDVIITMGVLSLF-S 192

Query: 502 ATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKN--PQQAIHQGYANAFSTIADAN 559
             + L  +A ++  +G +++ ++++ +RIRE  R+ +   P +  +             +
Sbjct: 193 IEIDLTTVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITS 252

Query: 560 ITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAI 596
            TTL+  ++L+  G   ++GF++T+ IG+     ++I
Sbjct: 253 GTTLVVILMLYLFGGAMLQGFSLTMLIGVTIGTASSI 289



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 236 LRNRVNELGVAEPLVQRQGATR-IVVELPGVQD 267
           +R  + + G A+PLVQ  G++R I+V +P   D
Sbjct: 71  MRGALEKAGFADPLVQNFGSSRDIMVRMPPAHD 103