Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 989 a.a., protein-export membrane protein, SecD/SecF family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  210 bits (535), Expect = 2e-58
 Identities = 129/320 (40%), Positives = 185/320 (57%), Gaps = 34/320 (10%)

Query: 284 REVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQV 343
           REVD + +L    A   P G+E              +  L G  ITDA    D+   P V
Sbjct: 357 REVDGE-ELLELHAMETPRGTE--------------QAPLEGDVITDAKQVLDQSSNPAV 401

Query: 344 NISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSA 403
           ++S++++G  K    + +NIG+ +A V   Y            + T    +    + QS 
Sbjct: 402 SMSMNADGARKWRKMTAENIGRRIAVVLDNY------------VYTAPNILGEIPSGQSE 449

Query: 404 LGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGM 463
           +  NF I       EA +LA +L++G L AP +IVEE  IGP++G++    GI + + G+
Sbjct: 450 ITGNFTIE------EAKDLANILKSGTLPAPTNIVEEAIIGPTLGKEAQAQGINSMVAGL 503

Query: 464 VAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDAN 523
           V V+LF + YY K G +A  AL+ N+  I+G+++ + G  +TLPGIAGIVLT+GM++DAN
Sbjct: 504 VIVVLFMIAYYAKGGFVAIAALVFNIFFILGILAQL-GTALTLPGIAGIVLTIGMSIDAN 562

Query: 524 VLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVT 583
           VLIFERI+EEL  G    QAI  GY  AFS I D+N+TT +T  IL+A+G G +KGFA+ 
Sbjct: 563 VLIFERIKEELAAGAGLLQAITSGYNKAFSAILDSNVTTFLTGAILYALGQGPVKGFAIV 622

Query: 584 LSIGILTSMFTAIVGTRCIV 603
           L IGI +S F+A+  TR IV
Sbjct: 623 LMIGIASSFFSAVFITRVIV 642



 Score = 65.5 bits (158), Expect = 1e-14
 Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 17/184 (9%)

Query: 436 SIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRK--FGMIANIALMANLVLII 493
           +I     +G ++     +  ++A  + +VA+ L+ +L +RK  + + + IAL  + + ++
Sbjct: 795 AITGSSKVGATVADDIKNSSMEAMFFALVAIFLYILLRFRKWQYSLASIIALAHDTLFVV 854

Query: 494 GVMSMIP--GATMTLPG--IAGIVLTVGMAVDANVLIFERIREELREG------KNPQQA 543
              ++    GAT  +    IA ++  +G +++  V++F+RIRE +         K    A
Sbjct: 855 AAFAIASAFGATFEIDQVFIAAMLTVIGYSINDTVIVFDRIRENITNRGTSKLVKMFNDA 914

Query: 544 IHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAI-VGTRCI 602
           I+Q  A    T    + TTLI  I+L   G   ++GF+  L +G+L   +++I + T  +
Sbjct: 915 INQTMARTLIT----SFTTLIVVIVLLIFGGEVLRGFSFALFVGVLVGTYSSIYIATPIV 970

Query: 603 VNLL 606
           V+L+
Sbjct: 971 VDLM 974



 Score = 65.1 bits (157), Expect = 1e-14
 Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 40/250 (16%)

Query: 111 YWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLV-SQQEEAFRSDLRDEKIRYRAIR 169
           Y  + +    + LGLDL+GG+H  + V     ++ L  + + EAF +             
Sbjct: 71  YTFKEVKETELGLGLDLQGGMHVTLAVSPVEIVKGLAGNSKNEAFNA------------- 117

Query: 170 PLSDAVEVTLRDAEQL-----AQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARL--- 221
            + +A E++    E+      A  K     K  +  + T+ + GR  L +  +E      
Sbjct: 118 AVDEAEELSKTSNEKFVDLFYAAWKEKSGDKQLNTIYATAANRGRISLESSDSEILSIID 177

Query: 222 QEIRNYAVEQNITILRNRVNELGVAEPLVQR-QGATRIVVELPGVQDTARAKEILGATAT 280
           +E+ N A++++  ILR R++  G ++P +QR QG  RI +ELPGV +  R + +L   A 
Sbjct: 178 EEVEN-AIDRSFNILRTRIDRFGTSQPNIQRIQGTGRIQIELPGVDNQERVRNLLQGVAK 236

Query: 281 LEF---REVDDKAD---------LAAAAAGRAPAGSEIKFDRNG----RPVVLKKRVILG 324
           L+F    E+++  D         +A A A +  A +    D  G      +   +R +  
Sbjct: 237 LQFWRVAEINEYGDALQRINAALVAEAKANKPAAAASADADTTGAASDTTMTDLERQLAE 296

Query: 325 GSSITDASSS 334
           G   TD+ SS
Sbjct: 297 GGDETDSLSS 306