Pairwise Alignments

Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., preprotein translocase subunit SecD from Alteromonas macleodii MIT1002

 Score =  747 bits (1929), Expect = 0.0
 Identities = 375/617 (60%), Positives = 485/617 (78%), Gaps = 3/617 (0%)

Query: 1   MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKA 60
           MLN+  +WK L  ++ +A+ ALYALPNIYGED A+QI+  R A V  +T++ V  AL++ 
Sbjct: 1   MLNKNSIWKVLSALIVVAMCALYALPNIYGEDHAVQISAGRDAVVTDATVEQVKAALSEK 60

Query: 61  QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAP 120
            +S K +  EN  ILVR +D+DTQ+  R+ + +ALG D  VA+NLAP TP WLE +G AP
Sbjct: 61  NISPKRVEFENEQILVRVSDSDTQLVTRETLEKALGDDYYVAMNLAPDTPEWLEGLGGAP 120

Query: 121 MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLR 180
           MKLGLDLRGGVHFLMEVDM   + K +   E  FR+ LR+E IRYR ++ + D +++T R
Sbjct: 121 MKLGLDLRGGVHFLMEVDMTEVIAKSLEDAEGGFRTSLREEGIRYRGVKQVDDHIDITFR 180

Query: 181 DAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV 240
           D + L + +  L ++ RD+TF   +      L A F E++LQEIR+ AV+QNITI+RNRV
Sbjct: 181 DEDALDKAEFFLRNQSRDLTFNQVDD---LTLRAIFAESKLQEIRDNAVKQNITIIRNRV 237

Query: 241 NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRA 300
           N+LGVAEPLVQ+QGA RIVV+LPG+QDTARAKEIL ATATLEFR VD K D+  A  GR 
Sbjct: 238 NQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRMVDQKNDIRDALNGRV 297

Query: 301 PAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSK 360
           P GS++  D+ G P +L+KR++L GS I DA+S  DEYG P VNISLDSEGGNKMS  ++
Sbjct: 298 PPGSQVIEDQQGIPQLLEKRIMLTGSHIIDANSGVDEYGLPNVNISLDSEGGNKMSRSTR 357

Query: 361 KNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAH 420
            NIGK MATVF EYK +G+R+ +GK++  KHE+VI+ ATI++ LG  F+ITG+DSP EA 
Sbjct: 358 GNIGKPMATVFIEYKSTGERNKDGKLVFEKHEQVISVATIRAQLGSKFQITGLDSPKEAR 417

Query: 421 NLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI 480
           +LALLLRAGALIAPI IVEERT+GPS+G++NI++G+QA ++G+ AV++F ++YY+ FG++
Sbjct: 418 DLALLLRAGALIAPIQIVEERTVGPSLGKENIELGMQAIMYGLAAVLVFMLIYYKAFGVV 477

Query: 481 ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNP 540
           ANIAL+ NLV+I+G+MSMIPGAT+TLPG+AGIVLTVGMAVDANVLIFERIREE+R+G++P
Sbjct: 478 ANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIREEIRDGRSP 537

Query: 541 QQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTR 600
           Q AIHQGY +AFSTI DANITT I  +ILFAVGTG IKGF++TL IGI TSMFTAI+ TR
Sbjct: 538 QHAIHQGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMIGIATSMFTAILVTR 597

Query: 601 CIVNLLYGGKRINKLSI 617
            IVN ++GG+R+ KL+I
Sbjct: 598 VIVNAVWGGRRVEKLAI 614