Pairwise Alignments
Query, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056
Subject, 857 a.a., protein-export membrane protein SECD from Agrobacterium fabrum C58
Score = 337 bits (865), Expect = 1e-96
Identities = 196/502 (39%), Positives = 301/502 (59%), Gaps = 37/502 (7%)
Query: 108 STPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRA 167
S P W + + LGLDL+GG H +++++ +++ + R+ LRD IRY
Sbjct: 35 SMPAWYKD---NKVTLGLDLQGGSHIMLKIERSDIVKERLETIVGDVRTQLRDANIRYSG 91
Query: 168 IRPLSDAVEVTLRDAEQLAQTKLLLESKHR----------DMTFTTSESDGRFVLVAKFT 217
+ ++V + D Q+ K L + +T T G +L T
Sbjct: 92 LTGNGQQIQVRISDPAQMEAAKTALRDLTQPVSAGTLVGGSITEVTMNDGGDSLLRLNLT 151
Query: 218 EARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGA 277
+ + + AV Q+I ++R RV+E+G EPL+QRQG+ RI+V++PG+QD R K +L
Sbjct: 152 DEGIDYRLSSAVSQSIEVVRRRVDEVGTTEPLIQRQGSDRIIVQVPGLQDPQRLKSLLNQ 211
Query: 278 TATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPV--VLKKRVILGGSSITDASSSA 335
TA L FR VD A GR PA SE+ + ++ PV ++++R ++ G ++ DA +S
Sbjct: 212 TAKLSFRMVDTTMPAQDAMNGRPPATSEVLYSQDDPPVPYLVERRALVSGDNLVDAQASF 271
Query: 336 DEY-GRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394
++ P V DS G + + +++N+GK A V +V
Sbjct: 272 NQQTNEPVVTFRFDSRGAQRFAQATQQNVGKPFAIVL-------------------DNQV 312
Query: 395 INQATIQSAL-GRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 453
I+ I+ + G + +I+G S A++LA+LLRAGAL A +++VEERT+GPS+G +I
Sbjct: 313 ISAPVIREPIIGGSGQISGSFSVQGANDLAVLLRAGALPATLTVVEERTVGPSLGNDSIT 372
Query: 454 MGIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 513
G+ A G V V++F ++Y FG++ANIAL+ N+V++I V+S+I G+T+TLPGIAGIV
Sbjct: 373 AGLTASAIGAVGVLIFMFVFYGFFGLLANIALIVNVVMLIAVLSVI-GSTLTLPGIAGIV 431
Query: 514 LTVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 573
LT+GMAVD+NVLI+ERIREE++ GK QA+ G+ AF+TI DAN+TTLI A +LF +G
Sbjct: 432 LTIGMAVDSNVLIYERIREEVKSGKPLIQALDNGFTRAFATIIDANLTTLIVASVLFYMG 491
Query: 574 TGAIKGFAVTLSIGILTSMFTA 595
TG +KGFAVTL++GI+T++FTA
Sbjct: 492 TGPVKGFAVTLAVGIITTVFTA 513
Score = 62.8 bits (151), Expect = 6e-14
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 12/228 (5%)
Query: 380 RSPEGKVILTKHEEVINQATIQSALGRNF--------RITGIDSPAEAHNLALLLRAGAL 431
R+ +G+ L E +NQ + +NF RI D A A+ L G L
Sbjct: 591 RAKQGEADLADIRERLNQLNLGEIQAQNFGSPQDVLIRIQAQDGGENAEQSAITLVRGEL 650
Query: 432 IAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFT-VLYYRKFGMIANIALMANLV 490
+GP++ + M A+M++ V + +F + A I+++ ++V
Sbjct: 651 EDKYDFRRVEVVGPAVSGDLTVTSTIGVLLAMAAIMVYIWVRFEWQFALGAVISMVHDVV 710
Query: 491 LIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNP--QQAIHQGY 548
IG+ + G L IA I+ +G +++ V+I++R+RE LR K I
Sbjct: 711 FTIGLFVFL-GIEFNLTSIAAILTIIGYSLNDTVVIYDRVRENLRRYKKMPLSMIIDVSL 769
Query: 549 ANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAI 596
S +T L+ + L+ G I+ F + G+ +F+++
Sbjct: 770 NQTLSRTILTGLTVLLALLALYLFGGEVIRSFTFAMLFGVGIGVFSSV 817
Score = 34.3 bits (77), Expect = 2e-05
Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 21/198 (10%)
Query: 8 WKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKAQLSQKSI 67
WK + + L + + A PN++ E + + LD + ++ + I
Sbjct: 7 WKTVFIWLLVLASVFIASPNLFSEKQLESMPAWYKDNKVTLGLDLQGGSHIMLKIERSDI 66
Query: 68 ALENGSILVRFNDTDTQISARDI-ISEALGKDKIVALNLAPSTPYWLESIGAA------P 120
E +V D TQ+ +I S G + + + + S P +E+ A P
Sbjct: 67 VKERLETIV--GDVRTQLRDANIRYSGLTGNGQQIQVRI--SDPAQMEAAKTALRDLTQP 122
Query: 121 MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLR 180
+ G + G + EV M+ + L+ R +L DE I YR +S ++EV R
Sbjct: 123 VSAGTLVGGSI---TEVTMNDGGDSLL-------RLNLTDEGIDYRLSSAVSQSIEVVRR 172
Query: 181 DAEQLAQTKLLLESKHRD 198
+++ T+ L++ + D
Sbjct: 173 RVDEVGTTEPLIQRQGSD 190
Score = 26.6 bits (57), Expect = 0.005
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 223 EIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLE 282
E+R E ++ +R R+N+L + E Q G+ + V+ QD E + TL
Sbjct: 589 EVRAKQGEADLADIRERLNQLNLGEIQAQNFGSPQDVLIRIQAQDGGENAE--QSAITLV 646
Query: 283 FREVDDKAD 291
E++DK D
Sbjct: 647 RGELEDKYD 655