Pairwise Alignments

Query, 466 a.a., U32 family peptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., putative collagenase (VIMSS) from Escherichia coli BW25113

 Score =  129 bits (324), Expect = 3e-34
 Identities = 109/421 (25%), Positives = 175/421 (41%), Gaps = 78/421 (18%)

Query: 10  ELLSPAGSLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLQIGINEAHALGKKFYV 69
           ELLSPA      R A  +GADAVY G P +  R  N   + +++   +  AH  G K +V
Sbjct: 9   ELLSPARDAAIAREAILHGADAVYIGGPGFGAR-HNASNSLKDIAELVPFAHRYGAKIFV 67

Query: 70  VCNIQPHNSKLKTFIRDLKPVIDMGPDALIMSDPGLIMMVREEFPHMPIHLSVQANAVNW 129
             N   H+ +L+   R +  +   G DALI+ D G++ +   + P + +H S Q +    
Sbjct: 68  TLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILEL---DIPPIELHASTQCDIRTV 124

Query: 130 ATVKFWASQGVERVIVSRELSLEEIEEIREKCPNTEIEVFVHGALCMAYSGRCLLSGYIN 189
              KF +  G  +++++REL+L++I  I +    T IE F+HGALC+AYSG+C +S    
Sbjct: 125 EKAKFLSDVGFTQIVLARELNLDQIRAIHQATDAT-IEFFIHGALCVAYSGQCYISHAQT 183

Query: 190 KRDPNQGTCTNACRWEYKVEAAKEDEAGQIVEQFDPNAAQAIEVQNERPDTTIGAGKPID 249
            R  N+G C+ ACR  Y +    +D+ G++V                             
Sbjct: 184 GRSANRGDCSQACRLPYTL----KDDQGRVV----------------------------- 210

Query: 250 DVVLLSESHRPDEKMAAFEDEHGTYIMNSKDLRAVQHVERLTQMGVHSLKIEGRTKSFYY 309
                                +  ++++ KD     ++  L   GV S KIEGR K   Y
Sbjct: 211 --------------------SYEKHLLSMKDNDQTANLGALIDAGVRSFKIEGRYKDMSY 250

Query: 310 CARTAQVYRKAIDDAV---------AGKPFDDSLMTTLESLAHRGYTEGFLRRHTHDAYQ 360
                  YR+ +D  +         +    +   + + E   HRG T+ F+     D   
Sbjct: 251 VKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYFVNARKGD--- 307

Query: 361 NYDYGYSVSDTQQFVGEFTG---KRRGAMAEVEVKNKFVLGDSLELMTPKGNVIFTLEAM 417
                    D+ +F+G   G   K      +V V      GD L ++  +  V F    +
Sbjct: 308 -----IGAFDSPKFIGLPVGEVVKVAKDHLDVAVTEPLANGDGLNVLIKREVVGFRANTV 362

Query: 418 E 418
           E
Sbjct: 363 E 363



 Score = 25.4 bits (54), Expect = 0.006
 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 45  NNEFNHENLQIGINEAHALGKKFYVVCNIQPH--------NSKLKTFIRDLKPVIDMGPD 96
           N E    NL+ G+ +   LG+  Y   ++Q +        NS L  F R+   ++D    
Sbjct: 449 NAEKAMNNLKDGLAK---LGQTLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAA-- 503

Query: 97  ALIMSDPGLIMMVREEFPHMP-IHLSVQANAVNWATVKFWASQGVERVIVSRELSLEEIE 155
            L     G    V +  P  P  HLS  AN  N    +F+   GV+ +  + E   E+ E
Sbjct: 504 RLASYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEEKGE 563