Pairwise Alignments

Query, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

Subject, 873 a.a., Chaperone protein ClpB (ATP-dependent unfoldase) from Variovorax sp. SCN45

 Score = 1060 bits (2742), Expect = 0.0
 Identities = 543/849 (63%), Positives = 676/849 (79%), Gaps = 8/849 (0%)

Query: 1   MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQL 60
           MR D+ T+KFQ A+ DAQSLALG D+ YIEP HL+ A+L Q+  P R LL    V+V  L
Sbjct: 1   MRQDKLTTKFQEALGDAQSLALGNDNAYIEPAHLLAAMLRQDDGP-RALLERAGVNVPGL 59

Query: 61  RSKLGEMLDRLPKVSGIGGDVQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLAAIEDKG 120
                  + +LP+V G    VQ+   LG L    +K A KR D +I+ E++LLA  + K 
Sbjct: 60  TQAAEAAIKKLPQVQG-HDIVQVGPELGKLLQATEKEAIKRNDQFIAGELFLLALADSKA 118

Query: 121 PLGHLLKEFGLTEKKVSEAIEKIRGGQKVNDPNAEELRQALEKFTIDLTERAEQGKLDPV 180
            +G   KE GL+ K +  AI+ +RGGQ VN  +AE  R+AL+K+ +DLTERA  GKLDPV
Sbjct: 119 DIGKTAKENGLSRKSLEAAIDAVRGGQGVNSADAEGQREALKKYCMDLTERARLGKLDPV 178

Query: 181 IGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL 240
           IGRD+EIRR IQVLQRRTKNNPV+IGEPGVGKTAIVEGLAQRI+  EVP+ L+G+RVLSL
Sbjct: 179 IGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGEVPDSLKGKRVLSL 238

Query: 241 DMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLK 300
           DM AL+AGAK+RGEFEERLK+VLNELAK+EG  I+FIDELHTMVGAGK EG+MDAGNMLK
Sbjct: 239 DMAALLAGAKFRGEFEERLKTVLNELAKDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLK 298

Query: 301 PALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELH 360
           PALARGELHCVGATTLDEYR+YIEKD ALERRFQK++V EP+VE TIAILRGL+E+YE+H
Sbjct: 299 PALARGELHCVGATTLDEYRKYIEKDAALERRFQKIIVGEPSVEATIAILRGLQEKYEVH 358

Query: 361 HHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKII 420
           H V+ITDPAIVAAA LS RYI+DR LPDKAIDLIDEAA+ I++++DSKPE +D+L+R++I
Sbjct: 359 HGVQITDPAIVAAAELSDRYITDRFLPDKAIDLIDEAAAKIKIEMDSKPEVMDRLDRRLI 418

Query: 421 QLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAALE 480
           QL+IE++A+  E DEAS+KRL ++ +E+ + +++ A+ +E+W+AEKA   G+  ++  ++
Sbjct: 419 QLQIEREAVRREKDEASQKRLGLIEDEIVKLQKEIADYDEIWQAEKAQAQGSAQVREDVD 478

Query: 481 QARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQE-----MTLLRNKVTDAE 535
           + +  +E  +R GD N+++ELQYG++P LEK+L  A  +E  +      TLLR +V   E
Sbjct: 479 KIKFQIEEWKRKGDFNKVAELQYGQLPALEKRLKEAEASEASKGKSSAPTLLRTQVGSEE 538

Query: 536 IAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPN 595
           IAEV+++ TGIPV+K+++ E++KLL MED LH+RV+GQ EA+  VANAIRRSR+GLSDPN
Sbjct: 539 IAEVVARATGIPVAKLMQGERDKLLVMEDKLHERVVGQDEAIGAVANAIRRSRSGLSDPN 598

Query: 596 RPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVG 655
           RP GSFLFLGPTGVGKTELCK LA FLFDSED ++R+DMSEFMEKHSVARL+GAPPGYVG
Sbjct: 599 RPTGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEFMEKHSVARLIGAPPGYVG 658

Query: 656 YEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715
           YEEGGYLTEAVRRKPYSV+LLDEVEKAHPDVFN+LLQVLDDGRLTDGQGRTVDF+NTV++
Sbjct: 659 YEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTVIV 718

Query: 716 MTSNLGSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIA 775
           MTSN+GS  IQ    +   + IKE V D +  +FRPEFLNR+DE+VVFH L  ++I+SIA
Sbjct: 719 MTSNIGSPIIQAMVGK-PSEEIKEAVWDELKNYFRPEFLNRIDETVVFHALDAKNIESIA 777

Query: 776 SIQLARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILA 835
           +IQL  L+ RLA+ D  LEV   AL  IA VGFDPV+GARPLKRAIQQ +ENPL+K +L 
Sbjct: 778 AIQLKVLQARLAKMDLGLEVSPAALAEIAKVGFDPVFGARPLKRAIQQRIENPLSKLLLD 837

Query: 836 GKFLPGSPI 844
           G F P   I
Sbjct: 838 GSFGPKDTI 846