Pairwise Alignments

Query, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

Subject, 872 a.a., ClpB protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1074 bits (2778), Expect = 0.0
 Identities = 551/857 (64%), Positives = 675/857 (78%), Gaps = 12/857 (1%)

Query: 1   MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQL 60
           MRLD+ T+KFQ A+ +AQ+LALG D+ YIEP HL++ALL Q   P + LL    V+V  L
Sbjct: 1   MRLDKLTTKFQEALGEAQTLALGADNAYIEPAHLLLALLRQADGP-QSLLQRAGVNVPGL 59

Query: 61  RSKLGEMLDRLPKVSGIGGDVQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLAAIEDKG 120
                  + RLP+V G    VQ+   L  L    +K A KR D +I+SE++LLA  + KG
Sbjct: 60  AKAAEAAVKRLPEVQG-QEQVQVGPELAKLLQATEKEALKRGDQFIASELFLLAVTDHKG 118

Query: 121 PLGHLLKEFGLTEKKVSEAIEKIRGGQKVNDPNAEELRQALEKFTIDLTERAEQGKLDPV 180
            LG +  E GL  K +  AI  +RGGQK++ P AE  R+AL+K+T+DLTERA  GKLDPV
Sbjct: 119 ELGRIANENGLNRKSLEAAITAVRGGQKMDSPEAEGQREALKKYTLDLTERARLGKLDPV 178

Query: 181 IGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL 240
           IGRDDEIRR IQVLQRRTKNNPV+IGEPGVGKTAIVEGLAQRI+  EVP+ L+G+RVLSL
Sbjct: 179 IGRDDEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGEVPDSLKGKRVLSL 238

Query: 241 DMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLK 300
           DM AL+AGAK+RGEFEERLK+VLNELAK+EG  I+FIDELHTMVGAGK EG+MDAGNMLK
Sbjct: 239 DMAALLAGAKFRGEFEERLKTVLNELAKDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLK 298

Query: 301 PALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELH 360
           PALARGELHCVGATTLDEYR+YIEKD ALERRFQK+LV EP+VE TIAILRGL+E+YE+H
Sbjct: 299 PALARGELHCVGATTLDEYRKYIEKDAALERRFQKILVGEPSVEATIAILRGLQEKYEVH 358

Query: 361 HHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKII 420
           H V+ITDPAIVAAA LSHRYI+DR LPDKAIDLIDEAAS I++++DSKPE +D+L+R++I
Sbjct: 359 HGVQITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAASKIKIELDSKPEVMDRLDRRLI 418

Query: 421 QLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAALE 480
           QL+IE++A+  E DEAS+KR  ++ EE+   E++ ++ +E+WKAEKAA  G++ +   ++
Sbjct: 419 QLQIEREAVRREKDEASQKRFGLIEEEIVRLEKEISDYDEIWKAEKAAALGSKDVMEEMD 478

Query: 481 QARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEM---------TLLRNKV 531
           + R  ++     GD N+++ELQYG++PELEK+L  A   E  +           LLR +V
Sbjct: 479 RIRSQIKTFTDKGDFNKVAELQYGKLPELEKRLKDAQAVESGKALNKDGKGRPQLLRTQV 538

Query: 532 TDAEIAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGL 591
              EIAEV+++ TGIPVSK+++ E++KLL ME  LH+RV+GQ EA+  VANAIRRSR+GL
Sbjct: 539 GAEEIAEVVARATGIPVSKLMQGERDKLLLMEGKLHERVVGQDEAIGAVANAIRRSRSGL 598

Query: 592 SDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPP 651
           SDPNRP GSFLFLGPTGVGKTELCK LA FLFDSED ++R+DMSEFMEKHSVARL+GAPP
Sbjct: 599 SDPNRPTGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEFMEKHSVARLIGAPP 658

Query: 652 GYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRN 711
           GYVGYEEGGYLTEAVRRKPYSV+LLDEVEKAHPDVFN+LLQVLDDGRLTDGQGRTVDF+N
Sbjct: 659 GYVGYEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKN 718

Query: 712 TVVIMTSNLGSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHI 771
           TV++MTSN+GS  IQ       Y  +KE V D +  HFRPEFLNR+DE+VVFH L  +HI
Sbjct: 719 TVIVMTSNIGSHMIQA-MVGSPYDEVKEAVWDELKNHFRPEFLNRIDETVVFHALDAQHI 777

Query: 772 KSIASIQLARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAK 831
           +SIA+IQL  L  RLA+ D  L V   AL  +A VGFDPV+GARPLKRAIQQ +ENPL+K
Sbjct: 778 ESIAAIQLKVLEARLAKMDLHLNVSSAALAELAKVGFDPVFGARPLKRAIQQRIENPLSK 837

Query: 832 SILAGKFLPGSPILLSV 848
            +L G++ P S I + V
Sbjct: 838 YLLEGRYPPKSSIPVDV 854