Pairwise Alignments

Query, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

Subject, 867 a.a., Chaperone protein ClpB from Azospirillum sp. SherDot2

 Score =  982 bits (2539), Expect = 0.0
 Identities = 514/855 (60%), Positives = 635/855 (74%), Gaps = 4/855 (0%)

Query: 1   MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQL 60
           M  +++T + +  I  AQ+LA+ R HQ + P HL+  LLD        L+     D    
Sbjct: 1   MDFEQYTERSRGFIQAAQTLAVRRGHQRLTPEHLLKTLLDDKEGLAANLIRAAGGDPKAA 60

Query: 61  RSKLGEMLDRLPKVSGIG-GDVQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLA-AIED 118
            S +   LD+LPKV G G G + L+  L  +F   +KVA+K  D+++++E  LLA A+ D
Sbjct: 61  LSAVDAELDKLPKVEGSGAGQLYLTPELSRVFEQAEKVAEKAGDSFVTAERILLALAMAD 120

Query: 119 KGPLGHLLKEFGLTEKKVSEAIEKIRGGQKVNDPNAEELRQALEKFTIDLTERAEQGKLD 178
             P G  LK  G+T + ++ AI  IR G+  +  +AE+   AL+K+  DLT  A  GKLD
Sbjct: 121 GTPSGKALKSAGVTPQALNTAINDIRKGRTADSASAEQGYDALKKYARDLTAAARDGKLD 180

Query: 179 PVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVL 238
           PVIGRD+EIRRTIQVL RRTKNNPV+IGEPGVGKTAIVEGLAQRI+  +VPEGL+ +++L
Sbjct: 181 PVIGRDEEIRRTIQVLARRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKNKQLL 240

Query: 239 SLDMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNM 298
           SLD+GALVAGAKYRGEFEERLK+VL+E+    G I++FIDELHT+VGAGK +G+MDA NM
Sbjct: 241 SLDLGALVAGAKYRGEFEERLKAVLSEIQAAAGEIVVFIDELHTLVGAGKSDGAMDASNM 300

Query: 299 LKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYE 358
           LKPALARGELHCVGATTLDE+R+YIEKD AL RRFQ V V EPTVEDTI+ILRGLKERYE
Sbjct: 301 LKPALARGELHCVGATTLDEFRKYIEKDAALARRFQPVFVSEPTVEDTISILRGLKERYE 360

Query: 359 LHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERK 418
           +HH V ITD AIV+AA+LS+RYI+DR LPDKAIDLIDEAAS +RM +DSKPEA+D+L+R+
Sbjct: 361 VHHGVRITDSAIVSAATLSNRYITDRFLPDKAIDLIDEAASRLRMAVDSKPEAIDELDRR 420

Query: 419 IIQLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAA 478
           IIQLKIE++AL  E D AS  RL  L  EL + E++ AEL   W+AEK  L G Q IK  
Sbjct: 421 IIQLKIEREALKREQDSASRDRLVNLERELSDLEQESAELTAKWQAEKDQLQGAQKIKED 480

Query: 479 LEQARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMTLLRNKVTDAEIAE 538
           LE+AR +LE A+R G+  R  EL YG IP LEK L  A +     M  L  +V D++IA 
Sbjct: 481 LEKARTELETAQRDGNWGRAGELAYGVIPGLEKALKDAEEHASSRM--LNEEVRDSDIAA 538

Query: 539 VLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPI 598
           V+S+ TG+PV KML  E+EKLL MED L  RVIGQ EA+  V+NA+RR+RAGL DPNRPI
Sbjct: 539 VVSRWTGVPVDKMLAGEREKLLAMEDKLRGRVIGQDEAIVAVSNAVRRARAGLQDPNRPI 598

Query: 599 GSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEE 658
           GSFLFLGPTGVGKTEL K LA FLFD E AMVR+DMSE+MEKHSVAR++GAPPGYVGYEE
Sbjct: 599 GSFLFLGPTGVGKTELTKALAEFLFDDETAMVRLDMSEYMEKHSVARMIGAPPGYVGYEE 658

Query: 659 GGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718
           GG LTEAVRR+PY V+L DEVEKAHPDVFN+LLQVLDDGRLTDGQGRTVDFRN V+IMTS
Sbjct: 659 GGALTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNVVIIMTS 718

Query: 719 NLGSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQ 778
           NLGS  + E     D   ++++VM+ V  HFRPEFLNR+DE ++FH L + H+  I  IQ
Sbjct: 719 NLGSQALAEQAEGEDSAAVRDEVMEAVRAHFRPEFLNRLDEILLFHRLDRRHMGGIVKIQ 778

Query: 779 LARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKF 838
           L RL + LA+R+  L VD+ A   +A  G+DPVYGARPLKR IQ+ ++NP+A  IL G+ 
Sbjct: 779 LGRLTKMLADREITLTVDEAATQWLADAGYDPVYGARPLKRVIQRELQNPMATLILEGRI 838

Query: 839 LPGSPILLSVKDGNI 853
             G  + +  + G++
Sbjct: 839 KDGQTVTVGAEGGSL 853