Pairwise Alignments

Query, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

Subject, 874 a.a., ATP-dependent Clp protease, ATP-binding subunit from Agrobacterium fabrum C58

 Score =  953 bits (2464), Expect = 0.0
 Identities = 492/846 (58%), Positives = 629/846 (74%), Gaps = 2/846 (0%)

Query: 1   MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQL 60
           M +D+++ + +  +  AQ+ AL  +HQ   P H++  LLD        L+     D  + 
Sbjct: 1   MNIDKYSERVRGFLQSAQTFALAENHQQFSPEHVLKVLLDDEQGMAASLIERAGGDAKEA 60

Query: 61  RSKLGEMLDRLPKVSGIGGDVQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLA-AIEDK 119
           R      L +LPKVSG  G + L++ L  +F+  + +A+K  D++++ E  L A AIE  
Sbjct: 61  RLANDAALAKLPKVSGGNGGLSLTAPLAKVFSTAEDLAKKAGDSFVTVERLLQALAIESS 120

Query: 120 GPLGHLLKEFGLTEKKVSEAIEKIRGGQKVNDPNAEELRQALEKFTIDLTERAEQGKLDP 179
                 LK+ G T + +++ I  IR G+  +  NAE+   AL+K+  DLTE A +G+LDP
Sbjct: 121 ASTSASLKKAGATAQALNQVINDIRKGRTADSANAEQGFDALKKYARDLTEEAREGRLDP 180

Query: 180 VIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLS 239
           VIGRDDEIRRTIQVL RRTKNNPV+IGEPGVGKTAI EGLA RI+N +VPE L+ +++++
Sbjct: 181 VIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKKLMA 240

Query: 240 LDMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNML 299
           LDMGAL+AGAKYRGEFEERLK+VLNE+  E G IILFIDE+HT+VGAGK +G+MDA N+L
Sbjct: 241 LDMGALIAGAKYRGEFEERLKAVLNEVQAENGGIILFIDEMHTLVGAGKADGAMDASNLL 300

Query: 300 KPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYEL 359
           KPALARGELHCVGATTLDEYR+++EKDPAL RRFQ VLVDEP VEDTI+ILRGLKE+YE 
Sbjct: 301 KPALARGELHCVGATTLDEYRKHVEKDPALARRFQPVLVDEPNVEDTISILRGLKEKYEQ 360

Query: 360 HHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKI 419
           HH V I+D A+VAAA+LS+RYI+DR LPDKAIDL+DEAAS +RMQ+DSKPE LD+L+R+I
Sbjct: 361 HHKVRISDSALVAAATLSNRYITDRFLPDKAIDLMDEAASRLRMQVDSKPEELDELDRRI 420

Query: 420 IQLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAAL 479
           IQLKIE++AL  E D++S  RL  L +EL + E     L   W+AEK  L     +K  L
Sbjct: 421 IQLKIEREALKQETDQSSVDRLRKLEDELADTEEKADALTARWQAEKQKLGHAADLKKRL 480

Query: 480 EQARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLA-AQAEMQEMTLLRNKVTDAEIAE 538
           ++AR +L +A+R G   R  EL YG IP LEK+L  A A+      ++++  VT   IA 
Sbjct: 481 DEARNELAIAQRNGQFQRAGELTYGIIPGLEKELAAAEARDSSGAGSMVQEVVTPDNIAH 540

Query: 539 VLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPI 598
           V+S+ TGIPV KMLE ++EKLLRMED L K V+GQ EAV+ V+ A+RRSRAGL DPNRPI
Sbjct: 541 VVSRWTGIPVDKMLEGQREKLLRMEDELAKSVVGQGEAVQAVSKAVRRSRAGLQDPNRPI 600

Query: 599 GSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEE 658
           GSF+FLGPTGVGKTEL K+LA FLFD E AMVR+DMSE+MEKHSVARL+GAPPGYVGYEE
Sbjct: 601 GSFIFLGPTGVGKTELTKSLARFLFDDETAMVRLDMSEYMEKHSVARLIGAPPGYVGYEE 660

Query: 659 GGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718
           GG LTEAVRR+PY V+L DE+EKAHPDVFN+LLQVLDDGRLTDGQGRTVDF+NT++IMTS
Sbjct: 661 GGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTIIIMTS 720

Query: 719 NLGSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQ 778
           NLGS  + +     D   ++E VM+ V  HFRPEFLNR+D+ ++FH L ++ + +I  IQ
Sbjct: 721 NLGSEFMTQMGDNDDVDSVRELVMERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQ 780

Query: 779 LARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKF 838
           L RL   LA+R   LE+D++A   +A+ G+DP YGARPLKR IQ++V++ LA+ IL G+ 
Sbjct: 781 LKRLVSLLADRKITLELDEDARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILGGEI 840

Query: 839 LPGSPI 844
             GS +
Sbjct: 841 PDGSRV 846