Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., RluA family pseudouridine synthase from Rhodanobacter sp000427505 FW510-R12

 Score =  116 bits (290), Expect = 8e-31
 Identities = 87/285 (30%), Positives = 144/285 (50%), Gaps = 29/285 (10%)

Query: 33  RSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVIT---VQAELEDEQRWEAQDLPLN---- 85
           +S +   L  G++ VNG    KP T++  G+ +    V+     E+R  A  L  +    
Sbjct: 9   KSMIYRLLRTGQVRVNGKR-AKPDTRLADGDTLRIPPVRVAERPEERAPASGLVASVADA 67

Query: 86  IVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDTTGL 145
           I++ED   +VI+KP     H G+G +   +   LL    P   +    +VHRLD+DT+G+
Sbjct: 68  IIFEDKHFLVIDKPAGVASHGGSGVSHGAI--ELLRAARPQEHLE---LVHRLDRDTSGV 122

Query: 146 MVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGM-IDKPIGRHSTK--RTLMSVS 202
           +V A+T    T L  A++   VT++Y  +++G        ++ P+ +   +    ++ V+
Sbjct: 123 LVFARTRAGLTGLQAAIRAGAVTKQYLCLMLGHPAKAKFDVNAPLLKSVLQGGERMVRVA 182

Query: 203 PMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRARIPKG 262
             GK ++T +R  E +     ++  L TGRTHQIRVH A++ HPL GD  YG R      
Sbjct: 183 DNGKPSLTFFREMEQYPSARLMQATLGTGRTHQIRVHAAHIGHPLAGDAKYGDR------ 236

Query: 263 ATEELTEMIRD--FDRQALHAVMLKFEHPVTGEELEFHAPVPDDM 305
              E+ +  R+   +R  LHA  + F+  + G    F AP+PDD+
Sbjct: 237 ---EMNKRYREMGLNRMFLHASHMSFD--LDGRSYSFSAPLPDDL 276