Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., Ribosomal large subunit pseudouridine synthase D from Xanthobacter sp. DMC5

 Score =  240 bits (612), Expect = 4e-68
 Identities = 142/323 (43%), Positives = 182/323 (56%), Gaps = 15/323 (4%)

Query: 7   LTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVIT 66
           LT  V    +GQRLD+ +A L  + SR+R++  + EG++++ G V+     +V  GEV T
Sbjct: 34  LTLAVAPEDVGQRLDRVLARLAPELSRTRIQRLVAEGQVSIGGGVVGDAAARVNAGEVYT 93

Query: 67  VQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH---- 122
           +     +     A+DLPL I +EDD +IVI+KP   VVHP  G A  T++NALL+H    
Sbjct: 94  LTLPPPEPAEPVAEDLPLTIAFEDDHLIVIDKPAGLVVHPAPGHASGTLVNALLYHCGDS 153

Query: 123 YSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVT----REYEAIVIGT 178
            S I  V R GIVHR+DKDT+GL+VVAK+  A   L         T    R Y A V G 
Sbjct: 154 LSGIGGVRRPGIVHRIDKDTSGLLVVAKSDAAHKGLAAQFADHGRTGPLERAYLAFVWGV 213

Query: 179 MTAGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHT------RLRLRLETGR 232
               G +D PI RH T R  M+V   G+HAVTH+ V E F   T       +  RLETGR
Sbjct: 214 PEPKGRVDAPIDRHPTHRQKMAVRGSGRHAVTHWEVLETFVGKTGAEVASLIECRLETGR 273

Query: 233 THQIRVHMAYLQHPLLGDTAYGGRARIPKG-ATEELTEMIRDFDRQALHAVMLKFEHPVT 291
           THQIRVHMA+  HPLLGD  YG   R       +E    +    RQALHA  L F HPVT
Sbjct: 274 THQIRVHMAHAGHPLLGDEVYGQGFRTKVSLLPDEARACLAALGRQALHAARLGFAHPVT 333

Query: 292 GEELEFHAPVPDDMVEMTLALRE 314
           GEEL F + +P D+  +  ALR+
Sbjct: 334 GEELSFESELPQDLAALEAALRD 356