Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas simiae WCS417

 Score =  114 bits (286), Expect = 2e-30
 Identities = 98/313 (31%), Positives = 152/313 (48%), Gaps = 29/313 (9%)

Query: 11  VKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAE 70
           V     GQR+D  +        ++ +   L +G++ VN   I KP  K+  G+++ V   
Sbjct: 16  VSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRI-KPEYKLQAGDIVRVPPV 74

Query: 71  LEDEQ-------RWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHY 123
              E+       +   Q L  +I++ED+ +IVINKP    VH G+G  +  V+ A     
Sbjct: 75  RVPERDEPVPLAQGLLQRLEASIIFEDNKLIVINKPCGIAVHGGSG-LNFGVIEAFRQLR 133

Query: 124 SPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG- 182
               E+    +VHRLD+DT+GL+++AK       L  AL+   V + Y A+V G   +  
Sbjct: 134 PDAKELE---LVHRLDRDTSGLLMIAKKRSMLRHLHTALRGDGVDKRYMALVRGNWASSI 190

Query: 183 GMIDKPIGRHSTK--RTLMSVSPMGKHAVTHYRVAEHFREH-TRLRLRLETGRTHQIRVH 239
             +  P+ + + +    ++ V   GK A+T ++V   F +  T +  +  TGRTHQIRVH
Sbjct: 191 KSVRAPLQKSNLRSGERMVEVDEEGKEALTLFKVLRRFGDFATMVEAKPVTGRTHQIRVH 250

Query: 240 MAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDF--DRQALHAVMLKFEHPVTGEELEF 297
             +  H + GDT YG          E+ ++ IRD    R  LHA ML    P  G EL+ 
Sbjct: 251 TLHAGHCIAGDTKYG---------DEDFSKEIRDLGGKRLFLHAYMLTVPLP-DGGELKL 300

Query: 298 HAPVPDDMVEMTL 310
            APV D+M   T+
Sbjct: 301 QAPV-DEMWAKTV 312