Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Variovorax sp. SCN45

 Score =  199 bits (505), Expect = 1e-55
 Identities = 126/316 (39%), Positives = 172/316 (54%), Gaps = 25/316 (7%)

Query: 2   AHQIELTQTVKDS-QLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVM 60
           A   EL   + DS Q GQRLD+A+A L  +FSRS L++ +  G + + G  +TK    V 
Sbjct: 20  AEASELRPFIIDSAQHGQRLDRALAALVPEFSRSYLQQLIEAGAVELQGRTVTKVSAGVK 79

Query: 61  GGEVITVQAE-LEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNAL 119
            G+   ++       Q +  + + L  VYED+ + +++KP   VVHP  G    T+LN L
Sbjct: 80  AGQAGRIELRPTPQSQAFRPETMDLVTVYEDEHLRIVDKPAGLVVHPAPGHWSGTLLNGL 139

Query: 120 LFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAI----V 175
           L      A +PRAGIVHRLD+DT+GLMVVA+T      +V  +  R+V R+Y AI     
Sbjct: 140 LALDPKAALLPRAGIVHRLDRDTSGLMVVARTRATMDAMVALIAAREVKRQYLAIGHKPW 199

Query: 176 IGTMTAGGMIDKPIGRHSTKRTLMSVSPMGKHA-VTHYRVAEHFREHTR---LRLRLETG 231
           +G   A   +D PIGR    R  M+V  + +HA  T   + E    H+    +R  LETG
Sbjct: 200 VG--AAARQVDAPIGRDPRNRLRMAVVDLERHAGKTARTLIERLDSHSEGCVVRCTLETG 257

Query: 232 RTHQIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVT 291
           RTHQIRVHMA + HPL+GD  YGG   +                RQALHA  L F HPVT
Sbjct: 258 RTHQIRVHMASIGHPLVGDALYGGAPAV-------------GLSRQALHAFRLAFVHPVT 304

Query: 292 GEELEFHAPVPDDMVE 307
            E +EF +P P D+++
Sbjct: 305 QEPMEFRSPPPPDLIQ 320