Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) from Variovorax sp. SCN45

 Score =  120 bits (302), Expect = 2e-32
 Identities = 81/227 (35%), Positives = 116/227 (51%), Gaps = 32/227 (14%)

Query: 83  PLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDT 142
           PL+ V+EDD ++  +KP   +  PG G+  +  L+A       + + P A IVHRLD  T
Sbjct: 6   PLHPVHEDDHLLAFDKPAGLLCVPGRGEDKQDCLSA-----RALLQWPDALIVHRLDMGT 60

Query: 143 TGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGT---MTAGGMIDKPIGRHSTKRTLM 199
           +GL+V+A+ +  Q  L  A  +R V + YEA+V GT   +    +ID P+     +R L 
Sbjct: 61  SGLVVMARGIEMQRALSAAFAERRVHKRYEAVVDGTLPQLDEWSVIDAPLMADWPRRPLQ 120

Query: 200 SVSPMGKHAVTHYRVAEHFREH------TRLRLRLETGRTHQIRVHMAYLQHPLLGDTAY 253
            + P GK +VT ++    +         T + L   TGR+HQ+RVH+  + HP+LGD  Y
Sbjct: 121 KIDPAGKPSVTRWKAISAWSGEPASSAATHVLLEPLTGRSHQLRVHLLSIGHPILGDALY 180

Query: 254 GG---RARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEF 297
           G    +AR P               R  LHA  L F HPVT EEL F
Sbjct: 181 GDAALQARAP---------------RLLLHASELGFVHPVTMEELRF 212