Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

 Score =  131 bits (330), Expect = 2e-35
 Identities = 93/322 (28%), Positives = 160/322 (49%), Gaps = 38/322 (11%)

Query: 11  VKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAE 70
           + +   GQR+D  +     +  +S +   L +G++ VN   + K   K+  G+V+ V   
Sbjct: 13  IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLEAGDVVRVPPV 71

Query: 71  LEDEQRWE----------AQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALL 120
             + +  E            +L   IVYEDD ++++NKP    VH G+G           
Sbjct: 72  TVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSG----------- 120

Query: 121 FHYSPIAEV----PRAG---IVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEA 173
            H+  I  +    P+A    +VHR+D+DT+G+++VAK   A   L    +++ V + Y A
Sbjct: 121 LHFGAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYA 180

Query: 174 IVIGTMTAG-GMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGR 232
           +V+G   A   +++ P+ ++    +++ V+P GK + T +R+ E F E T ++    TGR
Sbjct: 181 LVMGHWDAECKVVNAPLLKNEVN-SIVRVNPNGKPSETRFRILEKFAEATLVQASPVTGR 239

Query: 233 THQIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTG 292
           THQIRVH  Y+ HP+  D  YG R        +  T      +R  LHA  ++F HP + 
Sbjct: 240 THQIRVHTQYMGHPIAWDDRYGDR------RFDAYTAQF-GIERLFLHAANIQFVHPASE 292

Query: 293 EELEFHAPVPDDMVEMTLALRE 314
           ++LE HAP+   + +    +R+
Sbjct: 293 KKLEIHAPLEAHLEQALTKMRQ 314