Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 211 a.a., 23S rRNA (746) and tRNA (32) pseudouridine synthase from Pseudomonas putida KT2440

 Score =  123 bits (308), Expect = 4e-33
 Identities = 78/221 (35%), Positives = 112/221 (50%), Gaps = 18/221 (8%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDTT 143
           + I++ED  I+VINKP   +  PG  + +K  L   L         P A IVHRLD +T+
Sbjct: 6   VQILFEDAAILVINKPTLLLSVPGRAEDNKDCLITRLQENG----YPDALIVHRLDWETS 61

Query: 144 GLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTA-GGMIDKPIGRHS-TKRTLMSV 201
           G++++A+   +   L R    R+  + Y A+  G      G ID P+     TK   +  
Sbjct: 62  GIILLARDADSHRELSRQFHDRETEKAYTALCWGQPALDSGSIDLPLRYDPPTKPRHVVD 121

Query: 202 SPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRARIPK 261
              GKHA+T +R+ E   +H R+ L   TGR+HQ+RVHM  + HPLLGD  Y        
Sbjct: 122 HEQGKHALTFWRIVERCGDHCRVELTPITGRSHQLRVHMLSIGHPLLGDRLYAN------ 175

Query: 262 GATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
                  + +   +R  LHA ML F HPV+G+ L+F  P P
Sbjct: 176 ------PQALAAHERLCLHASMLSFTHPVSGQRLKFECPAP 210